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Publications

The most recent publications (2018 and 2019) of the LCSB researchers are listed below.

Download the complete publication list of the LCSB (2010-2019).

2019

Book

  • Gael Quesseveur, Aymeric Fouquier d'Herouel, Keith K Murai, David S Bouvier. "A Specialized Method to Resolve Fine 3D Features of Astrocytes in Nonhuman Primate (Marmoset, Callithrix jacchus) and Human Fixed Brain Samples.", Astrocytes. Methods and Protocols., Methods In Molecular Biology (Clifton, N.J.), 1938 - 85-95, 10.1007/978-1-4939-9068-9_6

Book Series

  • Andras Hartmann, Srikanth Ravichandran, Antonio Del Sol. "Modeling Cellular Differentiation and Reprogramming with Gene Regulatory Networks.", Computational Stem Cell Biology, Methods In Molecular Biology (Clifton, N.J.), 1975 - 37-51, 10.1007/978-1-4939-9224-9_2

Case Reports

  • Constanze Buus-Gehrig, Thomas Lehrnbecher, Luciana Porto, Martina Becker, Thomas Freiman, Michel Mittelbronn, Konrad Bochennek. "Pontine tumor in a neonate: case report and analysis of the current literature.", Journal Of Neurosurgery-Pediatrics, 23 - (5) - 1-7, 10.3171/2018.10.PEDS18215

Conference Proceeding

  • Johan Markdahl, Johan Thunberg, Jorge Goncalves. "Towards Almost Global Synchronization on the Stiefel Manifold", Proceedings of the IEEE Conference on Decision and Control, 2018-December - 496-501, 10.1109/CDC.2018.8619593

Journal

  • Frederic Brosseron, Carl-Christian Kolbe, Francesco Santarelli, Stephanie Carvalho, Anna Antonell, Sergio Castro-Gomez, Pawel Tacik, Aishwarya Alex Namasivayam, Graziella Mangone, Reinhard Schneider, Eicke Latz, Ullrich Wullner, Per Svenningsson, Raquel Sanchez-Valle, Jose Luis Molinuevo, Jean-Christophe Corvol, Michael T Heneka, AETIONOMY study group. "Multicenter Alzheimer's and Parkinson's disease immune biomarker verification study.", Alzheimers & Dementia, 10.1016/j.jalz.2019.07.018
  • Andrea Cossarizza, Hyun-Dong Chang, Andreas Radbruch, Andreas Acs, Dieter Adam, Sabine Adam-Klages, William W Agace, Nima Aghaeepour, Mubeccel Akdis, Matthieu Allez, Larissa Nogueira Almeida, Giorgia Alvisi, Graham Anderson, Immanuel Andra, Francesco Annunziato, Achille Anselmo, Petra Bacher, Cosima T Baldari, Sudipto Bari, Vincenzo Barnaba, Joana Barros-Martins, Luca Battistini, Wolfgang Bauer, Sabine Baumgart, Nicole Baumgarth, Dirk Baumjohann, Bianka Baying, Mary Bebawy, Burkhard Becher, Wolfgang Beisker, Vladimir Benes, Rudi Beyaert, Alfonso Blanco, Dominic A Boardman, Christian Bogdan, Jessica G Borger, Giovanna Borsellino, Philip E Boulais, Jolene A Bradford, Dirk Brenner, Ryan R Brinkman, Anna E S Brooks, Dirk H Busch, Martin Buscher, Timothy P Bushnell, Federica Calzetti, Garth Cameron, Ilenia Cammarata, Xuetao Cao, Susanna L Cardell, Stefano Casola, Marco A Cassatella, Andrea Cavani, Antonio Celada, Lucienne Chatenoud, Pratip K Chattopadhyay, Sue Chow, Eleni Christakou, Luka Cicin-Sain, Mario Clerici, Federico S Colombo, Laura Cook, Anne Cooke, Andrea M Cooper, Alexandra J Corbett, Antonio Cosma, Lorenzo Cosmi, Pierre G Coulie, Ana Cumano, Ljiljana Cvetkovic, Van Duc Dang, Chantip Dang-Heine, Martin S Davey, Derek Davies, Sara De Biasi, Genny Del Zotto, Gelo Victoriano Dela Cruz, Michael Delacher, Silvia Della Bella, Paolo Dellabona, Gunnur Deniz, Mark Dessing, James P Di Santo, Andreas Diefenbach, Francesco Dieli, Andreas Dolf, Thomas Dorner, Regine J Dress, Diana Dudziak, Michael Dustin, Charles-Antoine Dutertre, Friederike Ebner, Sidonia B G Eckle, Matthias Edinger, Pascale Eede, Gotz R A Ehrhardt, Marcus Eich, Pablo Engel, Britta Engelhardt, Anna Erdei, Charlotte Esser, Bart Everts, Maximilien Evrard, Christine S Falk, Todd A Fehniger, Mar Felipo-Benavent, Helen Ferry, Markus Feuerer, Andrew Filby, Kata Filkor, Simon Fillatreau, Marie Follo, Irmgard Forster, John Foster, Gemma A Foulds, Britta Frehse, Paul S Frenette, Stefan Frischbutter, Wolfgang Fritzsche, David W Galbraith, Anastasia Gangaev, Natalio Garbi, Brice Gaudilliere, Ricardo T Gazzinelli, Jens Geginat, Wilhelm Gerner, Nicholas A Gherardin, Kamran Ghoreschi, Lara Gibellini, Florent Ginhoux, Keisuke Goda, Dale I Godfrey, Christoph Goettlinger, Jose M Gonzalez-Navajas, Carl S Goodyear, Andrea Gori, Jane L Grogan, Daryl Grummitt, Andreas Grutzkau, Claudia Haftmann, Jonas Hahn, Hamida Hammad, Gunter Hammerling, Leo Hansmann, Goran Hansson, Christopher M Harpur, Susanne Hartmann, Andrea Hauser, Anja E Hauser, David L Haviland, David Hedley, Daniela C Hernandez, Guadalupe Herrera, Martin Herrmann, Christoph Hess, Thomas Hofer, Petra Hoffmann, Kristin Hogquist, Tristan Holland, Thomas Hollt, Rikard Holmdahl, Pleun Hombrink, Jessica P Houston, Bimba F Hoyer, Bo Huang, Fang-Ping Huang, Johanna E Huber, Jochen Huehn, Michael Hundemer, Christopher A Hunter, William Y K Hwang, Anna Iannone, Florian Ingelfinger, Sabine M Ivison, Hans-Martin Jack, Peter K Jani, Beatriz Javega, Stipan Jonjic, Toralf Kaiser, Tomas Kalina, Thomas Kamradt, Stefan H E Kaufmann, Baerbel Keller, Steven L C Ketelaars, Ahad Khalilnezhad, Srijit Khan, Jan Kisielow, Paul Klenerman, Jasmin Knopf, Hui-Fern Koay, Katja Kobow, Jay K Kolls, Wan Ting Kong, Manfred Kopf, Thomas Korn, Katharina Kriegsmann, Hendy Kristyanto, Thomas Kroneis, Andreas Krueger, Jenny Kuhne, Christian Kukat, Desiree Kunkel, Heike Kunze-Schumacher, Tomohiro Kurosaki, Christian Kurts, Pia Kvistborg, Immanuel Kwok, Jonathan Landry, Olivier Lantz, Paola Lanuti, Francesca LaRosa, Agnes Lehuen, Salome LeibundGut-Landmann, Michael D Leipold, Leslie Y T Leung, Megan K Levings, Andreia C Lino, Francesco Liotta, Virginia Litwin, Yanling Liu, Hans-Gustaf Ljunggren, Michael Lohoff, Giovanna Lombardi, Lilly Lopez, Miguel Lopez-Botet, Amy E Lovett-Racke, Erik Lubberts, Herve Luche, Burkhard Ludewig, Enrico Lugli, Sebastian Lunemann, Holden T Maecker, Laura Maggi, Orla Maguire, Florian Mair, Kerstin H Mair, Alberto Mantovani, Rudolf A Manz, Aaron J Marshall, Alicia Martinez-Romero, Gloria Martrus, Ivana Marventano, Wlodzimierz Maslinski, Giuseppe Matarese, Anna Vittoria Mattioli, Christian Maueroder, Alessio Mazzoni, James McCluskey, Mairi McGrath, Helen M McGuire, Iain B McInnes, Henrik E Mei, Fritz Melchers, Susanne Melzer, Dirk Mielenz, Stephen D Miller, Kingston H G Mills, Hans Minderman, Jenny Mjosberg, Jonni Moore, Barry Moran, Lorenzo Moretta, Tim R Mosmann, Susann Muller, Gabriele Multhoff, Luis Enrique Munoz, Christian Munz, Toshinori Nakayama, Milena Nasi, Katrin Neumann, Lai Guan Ng, Antonia Niedobitek, Sussan Nourshargh, Gabriel Nunez, Jose-Enrique O'Connor, Aaron Ochel, Anna Oja, Diana Ordonez, Alberto Orfao, Eva Orlowski-Oliver, Wenjun Ouyang, Annette Oxenius, Raghavendra Palankar, Isabel Panse, Kovit Pattanapanyasat, Malte Paulsen, Dinko Pavlinic, Livius Penter, Part Peterson, Christian Peth, Jordi Petriz, Federica Piancone, Winfried F Pickl, Silvia Piconese, Marcello Pinti, A Graham Pockley, Malgorzata Justyna Podolska, Zhiyong Poon, Katharina Pracht, Immo Prinz, Carlo E M Pucillo, Sally A Quataert, Linda Quatrini, Kylie M Quinn, Helena Radbruch, Tim R D J Radstake, Susann Rahmig, Hans-Peter Rahn, Bartek Rajwa, Gevitha Ravichandran, Yotam Raz, Jonathan A Rebhahn, Diether Recktenwald, Dorothea Reimer, Caetano Reis E Sousa, Ester B M Remmerswaal, Lisa Richter, Laura G Rico, Andy Riddell, Aja M Rieger, J Paul Robinson, Chiara Romagnani, Anna Rubartelli, Jurgen Ruland, Armin Saalmuller, Yvan Saeys, Takashi Saito, Shimon Sakaguchi, Francisco Sala-de-Oyanguren, Yvonne Samstag, Sharon Sanderson, Inga Sandrock, Angela Santoni, Ramon Bellmas Sanz, Marina Saresella, Catherine Sautes-Fridman, Birgit Sawitzki, Linda Schadt, Alexander Scheffold, Hans U Scherer, Matthias Schiemann, Frank A Schildberg, Esther Schimisky, Andreas Schlitzer, Josephine Schlosser, Stephan Schmid, Steffen Schmitt, Kilian Schober, Daniel Schraivogel, Wolfgang Schuh, Thomas Schuler, Reiner Schulte, Axel Ronald Schulz, Sebastian R Schulz, Cristiano Scotta, Daniel Scott-Algara, David P Sester, T Vincent Shankey, Bruno Silva-Santos, Anna Katharina Simon, Katarzyna M Sitnik, Silvano Sozzani, Daniel E Speiser, Josef Spidlen, Anders Stahlberg, Alan M Stall, Natalie Stanley, Regina Stark, Christina Stehle, Tobit Steinmetz, Hannes Stockinger, Yousuke Takahama, Kiyoshi Takeda, Leonard Tan, Attila Tarnok, Gisa Tiegs, Gergely Toldi, Julia Tornack, Elisabetta Traggiai, Mohamed Trebak, Timothy I M Tree, Joe Trotter, John Trowsdale, Maria Tsoumakidou, Henning Ulrich, Sophia Urbanczyk, Willem van de Veen, Maries van den Broek, Edwin van der Pol, Sofie Van Gassen, Gert Van Isterdael, Rene A W van Lier, Marc Veldhoen, Salvador Vento-Asturias, Paulo Vieira, David Voehringer, Hans-Dieter Volk, Anouk von Borstel, Konrad von Volkmann, Ari Waisman, Rachael V Walker, Paul K Wallace, Sa A Wang, Xin M Wang, Michael D Ward, Kirsten A Ward-Hartstonge, Klaus Warnatz, Gary Warnes, Sarah Warth, Claudia Waskow, James V Watson, Carsten Watzl, Leonie Wegener, Thomas Weisenburger, Annika Wiedemann, Jurgen Wienands, Anneke Wilharm, Robert John Wilkinson, Gerald Willimsky, James B Wing, Rieke Winkelmann, Thomas H Winkler, Oliver F Wirz, Alicia Wong, Peter Wurst, Jennie H M Yang, Juhao Yang, Maria Yazdanbakhsh, Liping Yu, Alice Yue, Hanlin Zhang, Yi Zhao, Susanne Maria Ziegler, Christina Zielinski, Jakob Zimmermann, Arturo Zychlinsky. "Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).", European Journal Of Immunology, 49 - (10) - 1457-1973, 10.1002/eji.201970107
  • Jaroslav Slobodnik, Juliane Hollender, Tobias Schulze, Emma L. Schymanski, Werner Brack. "Establish data infrastructure to compile and exchange environmental screening data on a European scale", Environmental Sciences Europe, 31 - (1) - 10.1186/s12302-019-0237-6
  • Annika K Wefers, Damian Stichel, Daniel Schrimpf, Roland Coras, Melanie Pages, Arnault Tauziede-Espariat, Pascale Varlet, Daniel Schwarz, Figen Soylemezoglu, Ute Pohl, Jose Pimentel, Jochen Meyer, Ekkehard Hewer, Anna Japp, Abhijit Joshi, David E Reuss, Annekathrin Reinhardt, Philipp Sievers, M Belen Casalini, Azadeh Ebrahimi, Kristin Huang, Christian Koelsche, Hu Liang Low, Olinda Rebelo, Dina Marnoto, Albert J Becker, Ori Staszewski, Michel Mittelbronn, Martin Hasselblatt, Jens Schittenhelm, Edmund Cheesman, Ricardo Santos de Oliveira, Rosane Gomes P Queiroz, Elvis Terci Valera, Volkmar H Hans, Andrey Korshunov, Adriana Olar, Keith L Ligon, Stefan M Pfister, Zane Jaunmuktane, Sebastian Brandner, Ruth G Tatevossian, David W Ellison, Thomas S Jacques, Mrinalini Honavar, Eleonora Aronica, Maria Thom, Felix Sahm, Andreas von Deimling, David T W Jones, Ingmar Blumcke, David Capper. "Isomorphic diffuse glioma is a morphologically and molecularly distinct tumour entity with recurrent gene fusions of MYBL1 or MYB and a benign disease course.", Acta Neuropathologica, 10.1007/s00401-019-02078-w
  • Bo Sha, Emma L Schymanski, Christoph Ruttkies, Ian T Cousins, Zhanyun Wang. "Exploring open cheminformatics approaches for categorizing per- and polyfluoroalkyl substances (PFASs).", Environmental Science-Processes & Impacts, 10.1039/c9em00321e
  • Jan Stanstrup, Corey D Broeckling, Rick Helmus, Nils Hoffmann, Ewy Mathe, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Rainer, Reza M Salek, Tobias Schulze, Emma L Schymanski, Michael A Stravs, Etienne A Thevenot, Hendrik Treutler, Ralf J M Weber, Egon Willighagen, Michael Witting, Steffen Neumann. "The metaRbolomics Toolbox in Bioconductor and beyond.", Metabolites, 9 - (10) - 10.3390/metabo9100200
  • Sarah Louise Nickels, Jonas Walter, Silvia Bolognin, Deborah Gérard, Christian Jaeger, Xiaobing Qing, Johan Tisserand, Javier Jarazo, Kathrin Hemmer, Amy Harms, Rashi Halder, Philippe Lucarelli, Emanuel Berger, Paul M.A. Antony, Enrico Glaab, Thomas Hankemeier, Christine Klein, Thomas Sauter, Lasse Sinkkonen, Jens Christian Schwamborn. "Impaired serine metabolism complements LRRK2-G2019S pathogenicity in PD patients", Parkinsonism & Related Disorders, 67 - 48-55, 10.1016/j.parkreldis.2019.09.018
  • Oskar Hickl, Anna Heintz-Buschart, Anke Trautwein-Schult, Rajna Hercog, Peer Bork, Paul Wilmes, Dorte Becher. "Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome.", Microorganisms, 7 - (9) - 10.3390/microorganisms7090367
  • P Kolber, R Kruger. "Gene-environment interaction and Mendelian randomisation.", Revue Neurologique, 10.1016/j.neurol.2019.04.010
  • Alexandre Mauroy, Jorge Goncalves. "Koopman-Based Lifting Techniques for Nonlinear Systems Identification", Ieee Transactions On Automatic Control, 10.1109/TAC.2019.2941433
  • Sarah Dethlefsen, Christian Jager, Jens Klockgether, Dietmar Schomburg, Burkhard Tummler. "Metabolite profiling of the cold adaptation of Pseudomonas putida KT2440 and cold-sensitive mutants.", Environmental Microbiology Reports, 10.1111/1758-2229.12793
  • Alvaro Gallego-Martinez, Teresa Requena, Pablo Roman-Naranjo, Patrick May, Jose A Lopez-Escamez. "Enrichment of damaging missense variants in genes related with axonal guidance signalling in sporadic Meniere's disease.", Journal Of Medical Genetics, 10.1136/jmedgenet-2019-106159
  • Mengmeng Zhao, Kun Song, Wenzhuo Hao, Lingyan Wang, Girish Patil, Qingmei Li, Lingling Xu, Fang Hua, Bishi Fu, Jens C Schwamborn, Martin E Dorf, Shitao Li. "Non-proteolytic ubiquitination of OTULIN regulates NF-kappaB signaling pathway.", Journal Of Molecular Cell Biology, 10.1093/jmcb/mjz081
  • Sayane Shome, R. Gonzalo Parra, Nazeefa Fatima, Alexander Miguel Monzon, Bart Cuypers, Yumna Moosa, Nilson Da Rocha Coimbra, Juliana Assis, Carla Giner-Delgado, Handan Melike Dönertaş, Yesid Cuesta-Astroz, Geetha Saarunya, Imane Allali, Shruti Gupta, Ambuj Srivastava, Manisha Kalsan, Catalina Valdivia, Gabriel J. Olguin-Orellana, Sofia Papadimitriou, Daniele Parisi, Nikolaj Pagh Kristensen, Leonor Rib, Marouen Ben Guebila, Eugen Bauer, Gaia Zaffaroni, Amel Bekkar, Efejiro Ashano, Lisanna Paladin, Marco Necci, Nicolás N. Moreyra, Martin Rydén, Jordan Villalobos-Solís, Nikolaos Papadopoulos, Candice Rafael, Tülay Karakulak, Yasin Kaya, Yvonne Gladbach, Sandeep Kumar Dhanda, Nikolina Šoštarić, Aishwarya Alex, Dan DeBlasio, Farzana Rahman. "Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers.", F1000Research, 8 - 10.12688/f1000research.20408.1
  • Katri Silvennoinen, Nikola de Lange, Sara Zagaglia, Simona Balestrini, Ganna Androsova, Merel Wassenaar, Pauls Auce, Andreja Avbersek, Felicitas Becker, Bianca Berghuis, Ellen Campbell, Antonietta Coppola, Ben Francis, Stefan Wolking, Gianpiero L Cavalleri, John Craig, Norman Delanty, Michael R Johnson, Bobby P C Koeleman, Wolfram S Kunz, Holger Lerche, Anthony G Marson, Terence J O'Brien, Josemir W Sander, Graeme J Sills, Pasquale Striano, Federico Zara, Job van der Palen, Roland Krause, Chantal Depondt, Sanjay M Sisodiya, EpiPGX Consortium. "Comparative effectiveness of antiepileptic drugs in juvenile myoclonic epilepsy.", Epilepsia Open, 4 - (3) - 420-430, 10.1002/epi4.12349
  • Sarvenaz Choobdar, Mehmet E. Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyuan Lin, Benjamin Hescott, Xiaozhe Hu, Johnathan Mercer, Ted Natoli, Rajiv Narayan, The DREAM Module Identification Challenge Consortium, Aravind Subramanian, Jitao D. Zhang, Gustavo Stolovitzky, Zoltàn Kutalik, Kasper Lage, Donna K. Slonim, Julio Saez-Rodriquez, Lenore J. Cowen, Sven Bergmann, Daniel Marbach. "Assessment of network module identification across complex diseases", Nature Methods, 16 - (9) - 843-852, 10.1038/s41592-019-0509-5
  • Nathalie Poupin, Marie Tremblay-Franco, Aurelien Amiel, Cecile Canlet, Didier Remond, Laurent Debrauwer, Dominique Dardevet, Ines Thiele, Maike K Aurich, Fabien Jourdan, Isabelle Savary-Auzeloux, Sergio Polakof. "Arterio-venous metabolomics exploration reveals major changes across liver and intestine in the obese Yucatan minipig.", Scientific Reports, 9 - (1) - 12527, 10.1038/s41598-019-48997-2
  • Gary Saunders, Michael Baudis, Regina Becker, Sergi Beltran, Christophe Beroud, Ewan Birney, Cath Brooksbank, Soren Brunak, Marc Van den Bulcke, Rachel Drysdale, Salvador Capella-Gutierrez, Paul Flicek, Francesco Florindi, Peter Goodhand, Ivo Gut, Jaap Heringa, Petr Holub, Jef Hooyberghs, Nick Juty, Thomas M Keane, Jan O Korbel, Ilkka Lappalainen, Brane Leskosek, Gert Matthijs, Michaela Th Mayrhofer, Andres Metspalu, Arcadi Navarro, Steven Newhouse, Tommi Nyronen, Angela Page, Bengt Persson, Aarno Palotie, Helen Parkinson, Jordi Rambla, David Salgado, Erik Steinfelder, Morris A Swertz, Alfonso Valencia, Susheel Varma, Niklas Blomberg, Serena Scollen. "Leveraging European infrastructures to access 1 million human genomes by 2022.", Nature Reviews Genetics, 20 - (11) - 693-701, 10.1038/s41576-019-0156-9
  • Nour Eldeen Mahmoud Khalifa, Mohamed Hamed N. Taha, Aboul Ella Hassanien, Ahmed Abdelmonem Hemedan. "Deep bacteria: Robust deep learning data augmentation design for limited bacterial colony dataset", International Journal Of Reasoning-Based Intelligent Systems, 11 - (3) - 256-264, 10.1504/IJRIS.2019.102610
  • Yuan Zhuang, Haifeng C Xu, Prashant V Shinde, Jens Warfsmann, Jelena Vasilevska, Balamurugan Sundaram, Kristina Behnke, Jun Huang, Jessica I Hoell, Arndt Borkhardt, Klaus Pfeffer, Mohamed S Taha, Diran Herebian, Ertan Mayatepek, Dirk Brenner, Mohammad Reza Ahmadian, Verena Keitel, Dagmar Wieczorek, Dieter Haussinger, Aleksandra A Pandyra, Karl S Lang, Philipp A Lang. "Fragile X mental retardation protein protects against tumour necrosis factor-mediated cell death and liver injury.", Gut, 10.1136/gutjnl-2019-318215
  • Werner Brack, Selim Ait-Aissa, Rolf Altenburger, Ian Cousins, Valeria Dulio, Beate Escher, Andreas Focks, Antoni Ginebreda, Daniel Hering, Klára Hilscherová, Juliane Hollender, Henner Hollert, Andreas Kortenkamp, Miren López de Alda, Leo Posthuma, Emma Schymanski, Helmut Segner, Jaroslav Slobodnik. "Let us empower the WFD to prevent risks of chemical pollution in European rivers and lakes", Environmental Sciences Europe, 31 - (1) - 10.1186/s12302-019-0228-7
  • Ilse M.J. Kant, Henri J.M.M. Mutsaerts, Simone J.T. van Montfort, Myriam G. Jaarsma-Coes, Theodoor D. Witkamp, Georg Winterer, Claudia D. Spies, Jeroen Hendrikse, Arjen J.C. Slooter, Jeroen de Bresser, BioCog Consortium. "The association between frailty and MRI features of cerebral small vessel disease", Scientific Reports, 9 - (1) - 10.1038/s41598-019-47731-2
  • Nesli-Ece Sen, Julia Canet-Pons, Melanie V Halbach, Aleksandar Arsovic, Ulrich Pilatus, Woon-Hyung Chae, Zeynep-Ece Kaya, Kay Seidel, Ewa Rollmann, Michel Mittelbronn, David Meierhofer, Chris I De Zeeuw, Laurens W J Bosman, Suzana Gispert, Georg Auburger. "Generation of an Atxn2-CAG100 knock-in mouse reveals N-acetylaspartate production deficit due to early Nat8l dysregulation.", Neurobiology Of Disease, 132 - 104559, 10.1016/j.nbd.2019.104559
  • Lisa-Marie Niestroj, Patrick May, Mykyta Artomov, Katja Kobow, Roland Coras, Eduardo Perez-Palma, Janine Altmuller, Holger Thiele, Peter Nurnberg, Costin Leu, Aarno Palotie, Mark J Daly, Karl Martin Klein, Rudi Beschorner, Yvonne G Weber, Ingmar Blumcke, Dennis Lal. "Assessment of genetic variant burden in epilepsy-associated brain lesions.", European Journal Of Human Genetics, 27 - (11) - 1738-1744, 10.1038/s41431-019-0484-4
  • Luke W. Bonham, Natasha Z.R. Steele, Celeste M. Karch, Iris Broce, Ethan G. Geier, Natalie L. Wen, Parastoo Momeni, John Hardy, Zachary A. Miller, Maria Luisa Gorno-Tempini, Christopher P. Hess, Patrick Lewis, Bruce L. Miller, William W. Seeley, Claudia Manzoni, Rahul S. Desikan, Sergio E. Baranzini, Raffaele Ferrari, Jennifer S. Yokoyama, International FTD-Genomics Consortium (IFGC). "Genetic variation across RNA metabolism and cell death gene networks is implicated in the semantic variant of primary progressive aphasia", Scientific Reports, 9 - (1) - 10.1038/s41598-019-46415-1
  • T Yvanka de Soysa, Sanjeev S Ranade, Satoshi Okawa, Srikanth Ravichandran, Yu Huang, Hazel T Salunga, Amelia Schricker, Antonio Del Sol, Casey A Gifford, Deepak Srivastava. "Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects.", Nature, 572 - (7767) - 120-124, 10.1038/s41586-019-1414-x
  • Liziane Cristina Campos Brusamarello-Santos, Dayane Alberton, Glaucio Valdameri, Doumit Camilios-Neto, Rafael Covre, Katia de Paiva Lopes, Michelle Zibetti Tadra-Sfeir, Helisson Faoro, Rose Adele Monteiro, Adriano Barbosa-Silva, William John Broughton, Fabio Oliveira Pedrosa, Roseli Wassem, Emanuel Maltempi de Souza. "Modulation of defence and iron homeostasis genes in rice roots by the diazotrophic endophyte Herbaspirillum seropedicae.", Scientific Reports, 9 - (1) - 10573, 10.1038/s41598-019-45866-w
  • Dajana Grossmann, Clara Berenguer-Escuder, Marie Estelle Bellet, David Scheibner, Jill Bohler, Francois Massart, Doron Rapaport, Alexander Skupin, Aymeric Fouquier d'Herouel, Manu Sharma, Jenny Ghelfi, Aleksandar Rakovic, Peter Lichtner, Paul Antony, Enrico Glaab, Patrick May, Kai Stefan Dimmer, Julia Catherine Fitzgerald, Anne Gruenewald, Rejko Kruger. "Mutations in RHOT1 disrupt ER-mitochondria contact sites interfering with calcium homeostasis and mitochondrial dynamics in Parkinson's disease.", Antioxidants & Redox Signaling, 31 - (16) - 1213-34, 10.1089/ars.2018.7718
  • Emma L Schymanski, Nancy C Baker, Antony J Williams, Randolph R Singh, Jean-Pierre Trezzi, Paul Wilmes, Pierre L Kolber, Rejko Kruger, Nicole Paczia, Carole L Linster, Rudi Balling. "Connecting environmental exposure and neurodegeneration using cheminformatics and high resolution mass spectrometry: potential and challenges.", Environmental Science-Processes & Impacts, 21 - (9) - 1426-1445, 10.1039/c9em00068b
  • David Hoksza, Piotr Gawron, Marek Ostaszewski, Jan Hausenauer, Reinhard Schneider. "Closing the gap between formats for storing layout information in systems biology.", Briefings In Bioinformatics, 10.1093/bib/bbz067
  • Dmitry A Ravcheev, Lubin Moussu, Semra Smajic, Ines Thiele. "Comparative Genomic Analysis Reveals Novel Microcompartment-Associated Metabolic Pathways in the Human Gut Microbiome.", Frontiers In Genetics, 10 - (JUL) - 636, 10.3389/fgene.2019.00636
  • Sonja Schötterl, Jennifer T. Miemietz, Elena I. Ilina, Naita M. Wirsik, Ingrid Ehrlich, Andrea Gall, Stephan M. Huber, Hans Lentzen, Michel Mittelbronn, Ulrike Naumann. "Mistletoe-based drugs work in synergy with radio-chemotherapy in the treatment of glioma in vitro and in vivo in glioblastoma bearing mice", Evidence-Based Complementary And Alternative Medicine, 2019 - 1376140, 10.1155/2019/1376140
  • Jonathan Arias-Fuenzalida, Javier Jarazo, Jonas Walter, Gemma Gomez-Giro, Julia I Forster, Rejko Krueger, Paul M A Antony, Jens C Schwamborn. "Automated high-throughput high-content autophagy and mitophagy analysis platform.", Scientific Reports, 9 - (1) - 9455, 10.1038/s41598-019-45917-2
  • Marouen Ben Guebila, Ines Thiele. "Predicting gastrointestinal drug effects using contextualized metabolic models.", Plos Computational Biology, 15 - (6) - e1007100, 10.1371/journal.pcbi.1007100
  • Peter Banda, John Caughman, Martin Cenek, Christof Teuscher. "Shift-symmetric configurations in two-dimensional cellular automata: Irreversibility, insolvability, and enumeration.", Chaos, 29 - (6) - 063120, 10.1063/1.5089889
  • Peter Riederer, Daniela Berg, Nicolas Casadei, Fubo Cheng, Joseph Classen, Christian Dresel, Wolfgang Jost, Rejko Kruger, Thomas Muller, Heinz Reichmann, Olaf Riess, Alexander Storch, Sabrina Strobel, Thilo van Eimeren, Hans-Ullrich Volker, Jurgen Winkler, Konstanze F Winklhofer, Ullrich Wullner, Friederike Zunke, Camelia-Maria Monoranu. "alpha-Synuclein in Parkinson's disease: causal or bystander?", Journal Of Neural Transmission, 126 - (7) - 815-840, 10.1007/s00702-019-02025-9
  • Christoph Ruttkies, Emma L Schymanski, Nadine Strehmel, Juliane Hollender, Steffen Neumann, Antony J Williams, Martin Krauss. "Supporting non-target identification by adding hydrogen deuterium exchange MS/MS capabilities to MetFrag.", Analytical And Bioanalytical Chemistry, 411 - (19) - 4683-700, 10.1007/s00216-019-01885-0
  • Masoud Ahookhosh, Francisco J. Aragón Artacho, Ronan M.T. Fleming, Phan T. Vuong. "Local convergence of the Levenberg–Marquardt method under Hölder metric subregularity", Advances In Computational Mathematics, 10.1007/s10444-019-09708-7
  • Adrien Rougny, Vasundra Toure, Stuart Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Drager, Michael L Blinov, Alice Villeger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly Sorokin, Falk Schreiber, Augustin Luna. "Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.", Journal Of Integrative Bioinformatics, 16 - (2) - 10.1515/jib-2019-0022
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Letter

  • Nassima Ouzren, Sylvie Delcambre, Jenny Ghelfi, Philip Seibler, Matthew J Farrer, Inke R Konig, Jan O Aasly, Joanne Trinh, Christine Klein, Anne Grunewald. "Mitochondrial DNA Deletions Discriminate Affected from Unaffected LRRK2 Mutation Carriers.", Annals Of Neurology, 86 - (2) - 324-326, 10.1002/ana.25510

2018

Book

  • Humberto De Vitto, Roberta Palorini, Giuseppina Votta, Ferdinando Chiaradonna. "Mitochondria in focus: Targeting the cell-death mechanism", Apoptosis and Beyond: The Many Ways Cells Die, 13-47, 10.1002/9781119432463.ch2
  • Sune S. Nielsen, Grégoire Danoy, Wiktor Jurkowski, Roland Krause, Reinhard Schneider, El Ghazali Talbi, Pascal Bouvry. "Evolutionary algorithms for the inverse protein folding problem", Handbook of Heuristics, 2-2 - 999-1023, 10.1007/978-3-319-07124-4_59

Book Series

  • Pranjul Shah, Emilie E L Muller, Laura A Lebrun, Linda Wampach, Paul Wilmes. "Sequential Isolation of DNA, RNA, Protein, and Metabolite Fractions from Murine Organs and Intestinal Contents for Integrated Omics of Host-Microbiota Interactions.", Microbial Proteomics. Methods in Molecular Biology., 1841 - 279-291, 10.1007/978-1-4939-8695-8_19
  • Pinar Alper, Regina Becker, Venkata Satagopam, Christophe Trefois, Valentin Grouès, Jacek Lebioda, Yohan Jarosz. "Provenance-enabled stewardship of human data in the GDPR Era", Provenance and Annotation of Data and Processes. IPAW 2018. Lecture Notes in Computer Science, 11017 LNCS - 266-269, 10.1007/978-3-319-98379-0_33
  • María Eugenia Curi, Lucía Carozzi, Renzo Massobrio, Sergio Nesmachnow, Grégoire Danoy, Marek Ostaszewski, Pascal Bouvry. "Single and multiobjective evolutionary algorithms for clustering biomedical information with unknown number of clusters", Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 10835 LNCS - 100-112, 10.1007/978-3-319-91641-5_9
  • Janine Habier, Patrick May, Anna Heintz-Buschart, Anubrata Ghosal, Anke K Wienecke-Baldacchino, Esther N M Nolte-'t Hoen, Paul Wilmes, Joelle V Fritz. "Extraction and Analysis of RNA Isolated from Pure Bacteria-Derived Outer Membrane Vesicles.", Bacterial Regulatory RNA, 1737 - 213-230, 10.1007/978-1-4939-7634-8_13

Conference Proceeding

  • Soumya Paul, Cui Su, Jun Pang, Andrzej Mizera. "A Decomposition-based Approach towards the Control of Boolean Networks", ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 11-20, 10.1145/3233547.3233550
  • Junyang Jin, Ye Yuan, Wei Pan, Claire Tomlin, Alex A. Webb, Jorge Gonçalves. "Identification of nonlinear sparse networks using sparse Bayesian learning", 2017 IEEE 56th Annual Conference on Decision and Control, CDC 2017, 2018-January - 6481-6486, 10.1109/CDC.2017.8264636
  • Johan Thunberg, Florian Bernard, Jorge Gonçalves. "Distributed synchronization of Euclidean transformations with guaranteed convergence", 2017 IEEE 56th Annual Conference on Decision and Control, CDC 2017, 2018-January - 3757-3762, 10.1109/CDC.2017.8264211
  • Johan Markdahl, Nicolo Colombo, Johan Thunberg, Jorge Goncalves. "Experimental design trade-offs for gene regulatory network inference: An in silico study of the yeast Saccharomyces cerevisiae cell cycle", 2017 IEEE 56th Annual Conference on Decision and Control, CDC 2017, 2018-January - 423-428, 10.1109/CDC.2017.8263701
  • Zuogong Yue, Johan Thunberg, Lennart Ljung, Jorge Goncalves. "On definition and inference of nonlinear Boolean dynamic networks", 2017 IEEE 56th Annual Conference on Decision and Control, CDC 2017, 2018-January - 429-434, 10.1109/CDC.2017.8263702
  • Ioannis Tzortzis, Christoforos N. Hadjicostis, Laurent Mombaerts. "Reconstruction of gene regulatory networks using an error filtering learning scheme", 55th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2017, 2018-January - 244-251, 10.1109/ALLERTON.2017.8262744
  • Maria Biryukov, Valentin Grouès, Venkata Satagopam, Reinhard Schneider. "BioKB - Text Mining and Semantic Technologies for Biomedical Content Discovery", CEUR Workshop Proceedings, 2042 -

Editorial

  • Alessandro Michelucci, Michel Mittelbronn, Diego Gomez-Nicola. "Microglia in health and disease: A unique immune cell population", Frontiers In Immunology, 9 - (AUG) - 1779, 10.3389/fimmu.2018.01779

Journal

  • Maria Angeliki S. Pavlou, Luc Grandbarbe, Noel J. Buckley, Simone P. Niclou, Alessandro Michelucci. "Transcriptional and epigenetic mechanisms underlying astrocyte identity", Progress In Neurobiology, 174 - 36-52, 10.1016/j.pneurobio.2018.12.007
  • K. I. W. Kane, E. Lucumi Moreno, C. M. Lehr, S. Hachi, R. Dannert, R. Sanctuary, C. Wagner, R.M.T. Fleming, J. Baller. "Determination of the rheological properties of Matrigel for optimum seeding conditions in microfluidic cell cultures", Aip Advances, 8 - (12) - 10.1063/1.5067382
  • Andreas Keller, Tobias Fehlmann, Thomas Laufer, Christina Backes, Mustafa Kahramann, Julia Alles, Ulrike Fischer, Marie Minet, Nicole Ludwig, Fabian Kern, Tim Kehl, Valentina Galata, Aneta Dusterloh, Hannah Schrors, Jochen Kohlhaas, Robert Bals, Hanno Huwer, Lars Geffers, Rejko Kruger, Rudi Balling, Hans-Peter Lenhof, Eckart Meese. "Large-scale validation of miRNAs by disease association, evolutionary conservation and pathway activity.", Rna Biology, 16 - (1) - 93-103, 10.1080/15476286.2018.1559689
  • Bianca Berghuis, Caragh Stapleton, Anja C.M. Sonsma, Janic Hulst, Gerrit Jan de Haan, Dick Lindhout, Rita Demurtas, Roland Krause, Chantal Depondt, Wolfram S. Kunz, Federico Zara, Pasquale Striano, John Craig, Pauls Auce, Anthony G. Marson, Hreinn Stefansson, Terence J. O'Brien, Michael R. Johnson, Graeme J. Sills, Stefan Wolking, Holger Lerche, Sanjay M. Sisodiya, Josemir W. Sander, Gianpiero L. Cavalleri, Bobby P.C. Koeleman, Mark McCormack, The EpiPGX Consortium. "A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine", Epilepsia Open, 4 - (1) - 102-109, 10.1002/epi4.12297
  • Herbert Oberacher, Vera Reinstadler, Marco Kreidl, Michael A Stravs, Juliane Hollender, Emma L Schymanski. "Annotating Nontargeted LC-HRMS/MS Data with Two Complementary Tandem Mass Spectral Libraries.", Metabolites, 9 - (1) - 10.3390/metabo9010003
  • Nicole J Van Bergen, Yiran Guo, Julia Rankin, Nicole Paczia, Julia Becker-Kettern, Laura S Kremer, Angela Pyle, Jean-Francois Conrotte, Carolyn Ellaway, Peter Procopis, Kristina Prelog, Tessa Homfray, Julia Baptista, Emma Baple, Matthew Wakeling, Sean Massey, Daniel P Kay, Anju Shukla, Katta M Girisha, Leslie E S Lewis, Saikat Santra, Rachel Power, Piers Daubeney, Julio Montoya, Eduardo Ruiz-Pesini, Reka Kovacs-Nagy, Martin Pritsch, Uwe Ahting, David R Thorburn, Holger Prokisch, Robert W Taylor, John Christodoulou, Carole L Linster, Sian Ellard, Hakon Hakonarson. "NAD(P)HX dehydratase (NAXD) deficiency: a novel neurodegenerative disorder exacerbated by febrile illnesses.", Brain, 142 - (1) - 50-58, 10.1093/brain/awy310
  • Jochen Klucken, Rejko Kruger, Peter Schmidt, Bastiaan R Bloem. "Management of Parkinson's Disease 20 Years from Now: Towards Digital Health Pathways.", Journal Of Parkinsons Disease, 8 - (s1) - S85-S94, 10.3233/JPD-181519
  • J B Legradi, C Di Paolo, M H S Kraak, H G van der Geest, E L Schymanski, A J Williams, M M L Dingemans, R Massei, W Brack, X Cousin, M-L Begout, R van der Oost, A Carion, V Suarez-Ulloa, F Silvestre, B I Escher, M Engwall, G Nilen, S H Keiter, D Pollet, P Waldmann, C Kienle, I Werner, A-C Haigis, D Knapen, L Vergauwen, M Spehr, W Schulz, W Busch, D Leuthold, S Scholz, C M Vom Berg, N Basu, C A Murphy, A Lampert, J Kuckelkorn, T Grummt, H Hollert. "An ecotoxicological view on neurotoxicity assessment.", Environmental Sciences Europe, 30 - (1) - 46, 10.1186/s12302-018-0173-x
  • Deborah Gerard, Florian Schmidt, Aurelien Ginolhac, Martine Schmitz, Rashi Halder, Peter Ebert, Marcel H Schulz, Thomas Sauter, Lasse Sinkkonen. "Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency.", Nucleic Acids Research, 47 - (3) - 1141-1163, 10.1093/nar/gky1240
  • Stephan Christel, Malte Herold, Sören Bellenberg, Antoine Buetti-Dinh, Mohamed El Hajjami, Igor V. Pivkin, Wolfgang Sand, Paul Wilmes, Ansgar Poetsch, Mario Vera, Mark Dopson. "Weak iron oxidation by Sulfobacillus thermosulfidooxidans maintains a favorable redox potential for chalcopyrite bioleaching", Frontiers In Microbiology, 9 - (DEC) - 3059, 10.3389/fmicb.2018.03059
  • Bettina Linnartz-Gerlach, Liviu-Gabriel Bodea, Christine Klaus, Aurelien Ginolhac, Rashi Halder, Lasse Sinkkonen, Jochen Walter, Marco Colonna, Harald Neumann. "TREM2 triggers microglial density and age-related neuronal loss.", Glia, 67 - (3) - 539-550, 10.1002/glia.23563
  • Bassel Abou-Khalil, Pauls Auce, Andreja Avbersek, Melanie Bahlo, David J. Balding, Thomas Bast, Larry Baum, Albert J. Becker, Felicitas Becker, Bianca Berghuis, Samuel F. Berkovic, Katja E. Boysen, Jonathan P. Bradfield, Lawrence C. Brody, Russell J. Buono, Ellen Campbell, Gregory D. Cascino, Claudia B. Catarino, Gianpiero L. Cavalleri, Stacey S. Cherny, Krishna Chinthapalli, Alison J. Coffey, Alastair Compston, Antonietta Coppola, Patrick Cossette, John J. Craig, Gerrit Jan de Haan, Peter De Jonghe, Carolien G.F. de Kovel, Norman Delanty, Chantal Depondt, Orrin Devinsky, Dennis J. Dlugos, Colin P. Doherty, Christian E. Elger, Johan G. Eriksson, Thomas N. Ferraro, Martha Feucht, Ben Francis, Andre Franke, Jacqueline A. French, Saskia Freytag, Verena Gaus, Eric B. Geller, Christian Gieger, Tracy Glauser, Simon Glynn, David B. Goldstein, Hongsheng Gui, Youling Guo, Kevin F. Haas, Hakon Hakonarson, Kerstin Hallmann, Sheryl Haut, Erin L. Heinzen, Ingo Helbig, Christian Hengsbach, Helle Hjalgrim, Michele Iacomino, Andrés Ingason, Jennifer Jamnadas-Khoda, Michael R. Johnson, Reetta Kälviäinen, Anne Mari Kantanen, Dalia Kasperavičiūte, Dorothee Kasteleijn-Nolst Trenite, Heidi E. Kirsch, Robert C. Knowlton, Bobby P.C. Koeleman, Roland Krause, Martin Krenn, Wolfram S. Kunz, Ruben Kuzniecky, Patrick Kwan. "Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies", Nature Communications, 9 - (1) - 10.1038/s41467-018-07524-z
  • Ornella Carrion, Nasmille L Larke-Mejia, Lisa Gibson, Muhammad Farhan Ul Haque, Javier Ramiro-Garcia, Terry J McGenity, J Colin Murrell. "Gene probing reveals the widespread distribution, diversity and abundance of isoprene-degrading bacteria in the environment.", Microbiome, 6 - (1) - 219, 10.1186/s40168-018-0607-0
  • Pia S Zeiner, Corinna Preusse, Anna Golebiewska, Jenny Zinke, Ane Iriondo, Arnaud Muller, Tony Kaoma, Katharina Filipski, Monika Muller-Eschner, Simon Bernatz, Anna-Eva Blank, Peter Baumgarten, Elena Ilina, Anne Grote, Martin L Hansmann, Marcel A Verhoff, Kea Franz, Friedrich Feuerhake, Joachim P Steinbach, Jorg Wischhusen, Werner Stenzel, Simone P Niclou, Patrick N Harter, Michel Mittelbronn. "Distribution and prognostic impact of microglia/macrophage subpopulations in gliomas.", Brain Pathology, 29 - (4) - 513-529, 10.1111/bpa.12690
  • Linda Wampach, Anna Heintz-Buschart, Joelle V Fritz, Javier Ramiro-Garcia, Janine Habier, Malte Herold, Shaman Narayanasamy, Anne Kaysen, Angela H Hogan, Lutz Bindl, Jean Bottu, Rashi Halder, Conny Sjoqvist, Patrick May, Anders F Andersson, Carine de Beaufort, Paul Wilmes. "Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.", Nature Communications, 9 - (1) - 5091, 10.1038/s41467-018-07631-x
  • Asha Kishore, Ashwin Ashok Kumar Sreelatha, Marc Sturm, Felix von-Zweydorf, Lasse Pihlstrom, Francesco Raimondi, Rob Russell, Peter Lichtner, Moinak Banerjee, Syam Krishnan, Roopa Rajan, Divya Kalikavil Puthenveedu, Sun Ju Chung, Peter Bauer, Olaf Riess, Christian Johannes Gloeckner, Rejko Kruger, Thomas Gasser, Manu Sharma, International Parkinson's Disease Genomics Consortium (IPDGC), Comprehensive Unbiased Risk Factor Assessment for Genetics and Environment in, Parkinson's Disease (COURAGE-PD). "Understanding the role of genetic variability in LRRK2 in Indian population.", Movement Disorders, 34 - (4) - 496-505, 10.1002/mds.27558
  • Federico Baldini, Almut Heinken, Laurent Heirendt, Stefania Magnusdottir, Ronan M T Fleming, Ines Thiele. "The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities.", Bioinformatics, 35 - (13) - 2332-2334, 10.1093/bioinformatics/bty941
  • Silvia Bolognin, Marie Fossépré, Xiaobing Qing, Javier Jarazo, Janez Ščančar, Edinson Lucumi Moreno, Sarah L. Nickels, Kobi Wasner, Nassima Ouzren, Jonas Walter, Anne Grünewald, Enrico Glaab, Luis Salamanca, Ronan M.T. Fleming, Paul M.A. Antony, Jens C. Schwamborn. "3D Cultures of Parkinson's Disease-Specific Dopaminergic Neurons for High Content Phenotyping and Drug Testing", Advanced Science, 6 - (1) - 1800927, 10.1002/advs.201800927
  • Tanja Eisemann, Barbara Costa, Patrick N Harter, Wolfgang Wick, Michel Mittelbronn, Peter Angel, Heike Peterziel. "Podoplanin expression is a prognostic biomarker but may be dispensable for the malignancy of glioblastoma.", Neuro-Oncology, 21 - (3) - 326-336, 10.1093/neuonc/noy184
  • Geraldine Hipp, Michel Vaillant, Nico J Diederich, Kirsten Roomp, Venkata P Satagopam, Peter Banda, Estelle Sandt, Kathleen Mommaerts, Sabine K Schmitz, Laura Longhino, Alexandra Schweicher, Anne-Marie Hanff, Beatrice Nicolai, Pierre Kolber, Dorothea Reiter, Lukas Pavelka, Sylvia Binck, Claire Pauly, Lars Geffers, Fay Betsou, Manon Gantenbein, Jochen Klucken, Thomas Gasser, Michele T Hu, Rudi Balling, Rejko Kruger. "The Luxembourg Parkinson's Study: A Comprehensive Approach for Stratification and Early Diagnosis.", Frontiers In Aging Neuroscience, 10 - 326, 10.3389/fnagi.2018.00326
  • Alberto Noronha, Jennifer Modamio, Yohan Jarosz, Elisabeth Guerard, Nicolas Sompairac, German Preciat, Anna Drofn Danielsdottir, Max Krecke, Diane Merten, Hulda S Haraldsdottir, Almut Heinken, Laurent Heirendt, Stefania Magnusdottir, Dmitry A Ravcheev, Swagatika Sahoo, Piotr Gawron, Lucia Friscioni, Beatriz Garcia, Mabel Prendergast, Alberto Puente, Mariana Rodrigues, Akansha Roy, Mouss Rouquaya, Luca Wiltgen, Alise Zagare, Elisabeth John, Maren Krueger, Inna Kuperstein, Andrei Zinovyev, Reinhard Schneider, Ronan M T Fleming, Ines Thiele. "The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.", Nucleic Acids Research, 47 - (D1) - D614-D624, 10.1093/nar/gky992
  • Joanne Trinh, Florentine M J Zeldenrust, Jana Huang, Meike Kasten, Susen Schaake, Sonja Petkovic, Harutyun Madoev, Anne Grunewald, Shahad Almuammar, Inke R Konig, Christina M Lill, Katja Lohmann, Christine Klein, Connie Marras. "Genotype-phenotype relations for the Parkinson's disease genes SNCA, LRRK2, VPS35: MDSGene systematic review.", Movement Disorders, 33 - (12) - 1857-1870, 10.1002/mds.27527
  • Lisa-Marie Niestroj, Juanjiangmeng Du, Michael Nothnagel, Patrick May, Aarno Palotie, Mark J Daly, Peter Nurnberg, Ingmar Blumcke, Dennis Lal. "Guideline-based and bioinformatic reassessment of lesion-associated gene and variant pathogenicity in focal human epilepsies.", Epilepsia, 59 - (11) - 2145-2152, 10.1111/epi.14579
  • Tina Harmuth, Caroline Prell-Schicker, Jonasz J. Weber, Frank Gellerich, Claudia Funke, Stefan Drießen, Janine C.D. Magg, Guido Krebiehl, Hartwig Wolburg, Stefanie N. Hayer, Stefan Hauser, Rejko Krüger, Ludger Schöls, Olaf Riess, Jeannette Hübener-Schmid. "Mitochondrial Morphology, Function and Homeostasis Are Impaired by Expression of an N-terminal Calpain Cleavage Fragment of Ataxin-3", Frontiers In Molecular Neuroscience, 11 - 368, 10.3389/fnmol.2018.00368
  • Mehedi Hassan, Aishwarya Alex Namasivayam, Dan DeBlasio, Nazeefa Fatima, Benjamin Siranosian, R Gonzalo Parra, Bart Cuypers, Sayane Shome, Alexander Miguel Monzon, Julien Fumey, Farzana Rahman. "Reflections on a journey: a retrospective of the ISCB Student Council symposium series.", Bmc Bioinformatics, 19 - (Suppl 12) - 347, 10.1186/s12859-018-2369-x
  • Simon Gutbier, Patrick May, Sylvie Berthelot, Abhimanyu Krishna, Timo Trefzer, Mehri Behbehani, Liudmila Efremova, Johannes Delp, Gerhard Gstraunthaler, Tanja Waldmann, Marcel Leist. "Major changes of cell function and toxicant sensitivity in cultured cells undergoing mild, quasi-natural genetic drift.", Archives Of Toxicology, 92 - (12) - 3487-3503, 10.1007/s00204-018-2326-5
  • Jorge Domínguez-Andrés, Boris Novakovic, Yang Li, Brendon P. Scicluna, Mark S. Gresnigt, Rob J.W. Arts, Marije Oosting, Simone J.C.F.M. Moorlag, Laszlo A. Groh, Jelle Zwaag, Rebecca M. Koch, Rob ter Horst, Leo A.B. Joosten, Cisca Wijmenga, Alessandro Michelucci, Tom van der Poll, Matthijs Kox, Peter Pickkers, Vinod Kumar, Henk Stunnenberg, Mihai G. Netea. "The Itaconate Pathway Is a Central Regulatory Node Linking Innate Immune Tolerance and Trained Immunity", Cell Metabolism, 29 - (1) - 211-220.e5, 10.1016/j.cmet.2018.09.003
  • Andrzej Mizera, Jun Pang, Qixia Yuan. "GPU-accelerated steady-state computation of large probabilistic Boolean networks", Formal Aspects Of Computing, 31 - (1) - 27-46, 10.1007/s00165-018-0470-6
  • Fozia Noor, Anne Kaysen, Paul Wilmes, Jochen G Schneider. "The Gut Microbiota and Hematopoietic Stem Cell Transplantation: Challenges and Potentials.", Journal Of Innate Immunity, 11 - (5) - 405-15, 10.1159/000492943
  • Eric W. Deutsch, Yasset Perez-Riverol, Robert J. Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, Emma L. Schymanski, Paul Wilmes, Viktoria Dorfer, Bernhard Kuster, Pieter Jan Volders, Nico Jehmlich, Johannes P.C. Vissers, Dennis W. Wolan, Ana Y. Wang, Luis Mendoza, Jim Shofstahl, Andrew W. Dowsey, Johannes Griss, Reza M. Salek, Steffen Neumann, Pierre Alain Binz, Henry Lam, Juan Antonio Vizcaíno, Nuno Bandeira, Hannes Röst. "Expanding the Use of Spectral Libraries in Proteomics", Journal Of Proteome Research, 17 - (12) - 4051-60, 10.1021/acs.jproteome.8b00485
  • Adriano Barbosa-Silva, Dorina Bratfalean, Wei Gu, Venkata Satagopam, Paul Houston, Lauren B Becnel, Serge Eifes, Fabien Richard, Andreas Tielmann, Sascha Herzinger, Kavita Rege, Rudi Balling, Paul Peeters, Reinhard Schneider. "Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART.", Bioinformatics, 35 - (9) - 1562-5, 10.1093/bioinformatics/bty809
  • Jarlei Fiamoncini, Milena Rundle, Helena Gibbons, E. Louise Thomas, Kerstin Geillinger-Kästle, Diana Bunzel, Jean Pierre Trezzi, Yoana Kiselova-Kaneva, Suzan Wopereis, Judith Wahrheit, Sabine E. Kulling, Karsten Hiller, Denise Sonntag, Diana Ivanova, Ben Van Ommen, Gary Frost, Lorraine Brennan, Jimmy Bell, Hannelore Daniel. "Plasma metabolome analysis identifies distinct human metabotypes in the postprandial state with different susceptibility to weight loss-mediated metabolic improvements", Faseb Journal, 32 - (10) - 5447-5458, 10.1096/fj.201800330R
  • Wilmes Paul, Calatayud Marta, Van de Wiele Tom. "Resolving host-microbe interactions in the gut: the promise of in vitro models to complement in vivo research.", Current Opinion In Microbiology, 44 - 28-33, 10.1016/j.mib.2018.07.001
  • Clement Frainay, Emma L Schymanski, Steffen Neumann, Benjamin Merlet, Reza M Salek, Fabien Jourdan, Oscar Yanes. "Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas.", Metabolites, 8 - (3) - 51, 10.3390/metabo8030051
  • Anne Grunewald, Kishore R Kumar, Carolyn M Sue. "New insights into the complex role of mitochondria in Parkinson's disease.", Progress In Neurobiology, 177 - 73-93, 10.1016/j.pneurobio.2018.09.003
  • Raquel Pinho, Isabel Paiva, Kristina Gotovac Jercic, Luis Fonseca-Ornelas, Ellen Gerhardt, Christiane Fahlbusch, Paula Garcia-Esparcia, Cemil Kerimoglu, Maria A S Pavlou, Anna Villar-Pique, Eva Szego, Tomas Lopes da Fonseca, Francesca Odoardi, Szabolcs Soeroes, Ana Cristina Rego, Wolfgang Fischle, Jens C Schwamborn, Thomas Meyer, Sebastian Kugler, Isidre Ferrer, Johannes Attems, Andre Fischer, Stefan Becker, Markus Zweckstetter, Fran Borovecki, Tiago F Outeiro. "Nuclear localization and phosphorylation modulate pathological effects of alpha-synuclein.", Human Molecular Genetics, 28 - (1) - 31-50, 10.1093/hmg/ddy326
  • Carole Sousa, Anna Golebiewska, Suresh K Poovathingal, Tony Kaoma, Yolanda Pires-Afonso, Silvia Martina, Djalil Coowar, Francisco Azuaje, Alexander Skupin, Rudi Balling, Knut Biber, Simone P Niclou, Alessandro Michelucci. "Single-cell transcriptomics reveals distinct inflammation-induced microglia signatures.", Embo Reports, 19 - (11) - 10.15252/embr.201846171
  • Emanuel Berger, Chiara Magliaro, Nicole Paczia, Anna S Monzel, Paul Antony, Carole L Linster, Silvia Bolognin, Arti Ahluwalia, Jens C Schwamborn. "Millifluidic culture improves human midbrain organoid vitality and differentiation.", Lab On A Chip, 18 - (20) - 3172-3183, 10.1039/c8lc00206a
  • Andras Hartmann, Satoshi Okawa, Gaia Zaffaroni, Antonio Del Sol. "SeesawPred: A Web Application for Predicting Cell-fate Determinants in Cell Differentiation.", Scientific Reports, 8 - (1) - 13355, 10.1038/s41598-018-31688-9
  • Karlfried Groebe, Jing Cen, Domitille Schvartz, Ernest Sargsyan, Azazul Chowdhury, Kirsten Roomp, Reinhard Schneider, Anders Alderborn, Jean Charles Sanchez, Peter Bergsten. "Palmitate-Induced Insulin Hypersecretion and Later Secretory Decline Associated with Changes in Protein Expression Patterns in Human Pancreatic Islets", Journal Of Proteome Research, 17 - (11) - 3824-3836, 10.1021/acs.jproteome.8b00239
  • Andreas Horn, Ningfei Li, Till A Dembek, Ari Kappel, Chadwick Boulay, Siobhan Ewert, Anna Tietze, Andreas Husch, Thushara Perera, Wolf-Julian Neumann, Marco Reisert, Hang Si, Robert Oostenveld, Christopher Rorden, Fang-Cheng Yeh, Qianqian Fang, Todd M Herrington, Johannes Vorwerk, Andrea A Kuhn. "Lead-DBS v2: Towards a comprehensive pipeline for deep brain stimulation imaging.", Neuroimage, 184 - 293-316, 10.1016/j.neuroimage.2018.08.068
  • Antoine Malabirade, Janine Habier, Anna Heintz-Buschart, Patrick May, Julien Godet, Rashi Halder, Alton Etheridge, David Galas, Paul Wilmes, Joëlle V. Fritz. "The RNA complement of outer membrane vesicles from Salmonella enterica Serovar Typhimurium under distinct culture conditions", Frontiers In Microbiology, 9 - (AUG) - 2015, 10.3389/fmicb.2018.02015
  • Andrew D McEachran, Kamel Mansouri, Chris Grulke, Emma L Schymanski, Christoph Ruttkies, Antony J Williams. ""MS-Ready" structures for non-targeted high-resolution mass spectrometry screening studies.", Journal Of Cheminformatics, 10 - (1) - 45, 10.1186/s13321-018-0299-2
  • Marek Ostaszewski, Emmanuel Kieffer, Gregoire Danoy, Reinhard Schneider, Pascal Bouvry. "Clustering approaches for visual knowledge exploration in molecular interaction networks.", Bmc Bioinformatics, 19 - (1) - 308, 10.1186/s12859-018-2314-z
  • Anne Grünewald. "Mutationen im VSP13D-Gen verursachen eine oftmals frühkindliche spastische Ataxie", Dgneurologie, 1 - (1) - 58–59, 10.1007/s42451-018-0005-7
  • Sonja Schotterl, Stephan M Huber, Hans Lentzen, Michel Mittelbronn, Ulrike Naumann. "Adjuvant Therapy Using Mistletoe Containing Drugs Boosts the T-Cell-Mediated Killing of Glioma Cells and Prolongs the Survival of Glioma Bearing Mice.", Evidence-Based Complementary And Alternative Medicine, 2018 - 3928572, 10.1155/2018/3928572
  • Sascha Herzinger, Valentin Groues, Wei Gu, Venkata Satagopam, Peter Banda, Christophe Trefois, Reinhard Schneider. "Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data.", Gigascience, 7 - (9) - 10.1093/gigascience/giy109
  • Holger Frohlich, Rudi Balling, Niko Beerenwinkel, Oliver Kohlbacher, Santosh Kumar, Thomas Lengauer, Marloes H Maathuis, Yves Moreau, Susan A Murphy, Teresa M Przytycka, Michael Rebhan, Hannes Rost, Andreas Schuppert, Matthias Schwab, Rainer Spang, Daniel Stekhoven, Jimeng Sun, Andreas Weber, Daniel Ziemek, Blaz Zupan. "From hype to reality: data science enabling personalized medicine", Bmc Medicine, 16 - (1) - 150, 10.1186/s12916-018-1122-7
  • Kamel Jabbari, Dheeraj R Bobbili, Dennis Lal, Eva M Reinthaler, Julian Schubert, Stefan Wolking, Vishal Sinha, Susanne Motameny, Holger Thiele, Amit Kawalia, Janine Altmuller, Mohammad Reza Toliat, Robert Kraaij, Jeroen van Rooij, Andre G Uitterlinden, M Arfan Ikram, Federico Zara, Anna-Elina Lehesjoki, Roland Krause, Fritz Zimprich, Thomas Sander, Bernd A Neubauer, Patrick May, Holger Lerche, Peter Nurnberg, EuroEPINOMICS CoGIE Consortium. "Rare gene deletions in genetic generalized and Rolandic epilepsies.", Plos One, 13 - (8) - e0202022, 10.1371/journal.pone.0202022
  • Melanie Kirchmeyer, Florence A Servais, Matthias Hamdorf, Petr V Nazarov, Aurelien Ginolhac, Rashi Halder, Laurent Vallar, Matthias Glanemann, Claudia Rubie, Frank Lammert, Stephanie Kreis, Iris Behrmann. "Cytokine-mediated modulation of the hepatic miRNome: miR-146b-5p is an IL-6-inducible miRNA with multiple targets.", Journal Of Leukocyte Biology, 104 - (5) - 987-1002, 10.1002/JLB.MA1217-499RR
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Report

  • Theodore Alexandrov, Sebastian Böcker, Pieter Dorrestein, Emma Schymanski. "Computational Metabolomics: Identification, Interpretation, Imaging", Dagstuhl Seminar 17491, Dagstuhl Reports, 7 - (12) - 10.4230/DagRep.7.12.1