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Publications

The most recent publications (2020 - 2021) of the LCSB researchers are listed below.

Download the complete publication list of the LCSB (2010-2021).

2021

Book

  • Andreas Husch, Frank Hertel. "DBS imaging methods II: Electrode localization", Connectomic Deep Brain Stimulation, 127-146,

Book Series

  • Adam Šmelko, Miroslav Kratochvíl, Martin Kruliš, Tomáš Sieger. "GPU-Accelerated Mahalanobis-Average Hierarchical Clustering Analysis", Euro-Par 2021: Parallel Processing. Euro-Par 2021. Lecture Notes in Computer Science., 12820 LNCS - 580-595, 10.1007/978-3-030-85665-6_36

Conference Proceeding

  • Vanja Vlasov, Marie Bofferding, Loïc Marx, Chencheng Zhang, Jorge Goncalves, Andreas Husch, Frank Hertel. "Automated Deep Learning-based Segmentation of Brain, SEEG and DBS Electrodes on CT Images", Bildverarbeitung für die Medizin 2021, Proceedings, German Workshop on Medical Image Computing, Regensburg, March 7-9, 2021, 92-97, 10.1007/978-3-658-33198-6_22
  • Corrado Ameli, Sonja Fixemer, David S. Bouvier, Alexander Skupin. "PRAQA: Protein relative abundance quantification algorithm for 3D fluorescent images", BIOIMAGING 2021 - 8th International Conference on Bioimaging; Part of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2021, 2 - 21-30, 10.5220/0010187400210030
  • Johan Markdahl, Daniele Proverbio, Jorge Goncalves. "Robust synchronization of heterogeneous robot swarms on the sphere", Proceedings of the IEEE Conference on Decision and Control, 2020-December - 5798-5803, 10.1109/CDC42340.2020.9304268

Journal

  • Semra Smajic, Cesar A Prada-Medina, Zied Landoulsi, Jenny Ghelfi, Sylvie Delcambre, Carola Dietrich, Javier Jarazo, Jana Henck, Saranya Balachandran, Sinthuja Pachchek, Christopher M Morris, Paul Antony, Bernd Timmermann, Sascha Sauer, Sandro L Pereira, Jens C Schwamborn, Patrick May, Anne Grunewald, Malte Spielmann. "Single-cell sequencing of human midbrain reveals glial activation and a Parkinson-specific neuronal state.", Brain, 10.1093/brain/awab446
  • Tim Van Den Bossche, Benoit J Kunath, Kay Schallert, Stephanie S Schape, Paul E Abraham, Jean Armengaud, Magnus O Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, Richard J Giannone, Timothy J Griffin, Live H Hagen, Rashi Halder, Celine Henry, Robert L Hettich, Robert Heyer, Pratik Jagtap, Nico Jehmlich, Marlene Jensen, Catherine Juste, Manuel Kleiner, Olivier Langella, Theresa Lehmann, Emma Leith, Patrick May, Bart Mesuere, Guylaine Miotello, Samantha L Peters, Olivier Pible, Pedro T Queiros, Udo Reichl, Bernhard Y Renard, Henning Schiebenhoefer, Alexander Sczyrba, Alessandro Tanca, Kathrin Trappe, Jean-Pierre Trezzi, Sergio Uzzau, Pieter Verschaffelt, Martin von Bergen, Paul Wilmes, Maximilian Wolf, Lennart Martens, Thilo Muth. "Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.", Nature Communications, 12 - (1) - 7305, 10.1038/s41467-021-27542-8
  • Enrico Glaab, Armin Rauschenberger, Rita Banzi, Chiara Gerardi, Paula Garcia, Jacques Demotes. "Biomarker discovery studies for patient stratification using machine learning analysis of omics data: a scoping review.", Bmj Open, 11 - (12) - e053674, 10.1136/bmjopen-2021-053674
  • Corey M Griffith, Adhish S Walvekar, Carole L Linster. "Approaches for completing metabolic networks through metabolite damage and repair discovery.", Current Opinion In Systems Biology, 28 - None, 10.1016/j.coisb.2021.100379
  • Ilya Potapov, Thirumala-Devi Kanneganti, Antonio Del Sol. "Fostering experimental and computational synergy to modulate hyperinflammation.", Trends In Immunology, 43 - (1) - 4-7, 10.1016/j.it.2021.11.004
  • Gabriela Novak, Steven Finkbeiner, Gaia Skibinski, Alexander Skupin. "Generation of two human induced pluripotent stem cell lines (iPSCs) with mutations of the alpha-synuclein (SNCA) gene associated with Parkinson's disease; the A53T mutation (LCSBi003) and a triplication of the SNCA gene (LCSBi007).", Stem Cell Research, 57 - 102600, 10.1016/j.scr.2021.102600
  • Anne-Marie Hanff, Anja K Leist, Joelle V Fritz, Claire Pauly, Rejko Kruger, Margareta Halek, NCER-PD Consortium. "Determinants of Self-Stigma in People with Parkinson's Disease: A Mixed Methods Scoping Review.", Journal Of Parkinsons Disease, 10.3233/JPD-212869
  • Martina Di Rienzo, Alessandra Romagnoli, Fabiola Ciccosanti, Giulia Refolo, Veronica Consalvi, Giuseppe Arena, Enza Maria Valente, Mauro Piacentini, Gian Maria Fimia. "AMBRA1 regulates mitophagy by interacting with ATAD3A and promoting PINK1 stability.", Autophagy, 1-11, 10.1080/15548627.2021.1997052
  • Verena Jakob, Arne Kuderle, Felix Kluge, Jochen Klucken, Bjoern M Eskofier, Jurgen Winkler, Martin Winterholler, Heiko Gassner. "Validation of a Sensor-Based Gait Analysis System with a Gold-Standard Motion Capture System in Patients with Parkinson's Disease.", Sensors, 21 - (22) - 10.3390/s21227680
  • Chloe Mirzayi, Audrey Renson, Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z Marques, David A MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Kirk Bergstrom, Ami Bhatt, Jordan E Bisanz, Jonathan Braun, Hector Corrada Bravo, Gregory A Buck, Frederic Bushman, David Casero, Gerard Clarke, Maria Carmen Collado, Paul D Cotter, John F Cryan, Ryan T Demmer, Suzanne Devkota, Eran Elinav, Juan S Escobar, Jennifer Fettweis, Robert D Finn, Anthony A Fodor, Sofia Forslund, Andre Franke, Cesare Furlanello, Jack Gilbert, Elizabeth Grice, Benjamin Haibe-Kains, Scott Handley, Pamela Herd, Susan Holmes, Jonathan P Jacobs, Lisa Karstens, Rob Knight, Dan Knights, Omry Koren, Douglas S Kwon, Morgan Langille, Brianna Lindsay, Dermot McGovern, Alice C McHardy, Shannon McWeeney, Noel T Mueller, Luigi Nezi, Matthew Olm, Noah Palm, Edoardo Pasolli, Jeroen Raes, Matthew R Redinbo, Malte Ruhlemann, R Balfour Sartor, Patrick D Schloss, Lynn Schriml, Eran Segal, Michelle Shardell, Thomas Sharpton, Ekaterina Smirnova, Harry Sokol, Justin L Sonnenburg, Sujatha Srinivasan, Louise B Thingholm, Peter J Turnbaugh, Vaibhav Upadhyay, Ramona L Walls, Paul Wilmes, Takuji Yamada, Georg Zeller, Mingyu Zhang, Ni Zhao, Liping Zhao, Wenjun Bao, Aedin Culhane, Viswanath Devanarayan, Joaquin Dopazo, Xiaohui Fan, Matthias Fischer, Wendell Jones, Rebecca Kusko, Christopher E Mason, Tim R Mercer, Susanna-Assunta Sansone, Andreas Scherer, Leming Shi, Shraddha Thakkar, Weida Tong, Russ Wolfinger, Christopher Hunter, Nicola Segata, Curtis Huttenhower, Jennifer B Dowd, Heidi E Jones, Levi Waldron, Genomic Standards Consortium, Massive Analysis and Quality Control Society. "Reporting guidelines for human microbiome research: the STORMS checklist.", Nature Medicine, 27 - (11) - 1885-1892, 10.1038/s41591-021-01552-x
  • Miroslav Kratochvil, Laurent Heirendt, St Elmo Wilken, Taneli Pusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst, Venkata P Satagopam, Oliver Ebenhoh, Reinhard Schneider, Christophe Trefois, Wei Gu. "COBREXA.jl: constraint-based reconstruction and exascale analysis.", Bioinformatics, (1-2) - 10.1093/bioinformatics/btab782
  • Catarina Pereira, Alexander Mazein, Carlos M Farinha, Michael A Gray, Karl Kunzelmann, Marek Ostaszewski, Irina Balaur, Margarida D Amaral, Andre O Falcao. "CyFi-MAP: an interactive pathway-based resource for cystic fibrosis.", Scientific Reports, 11 - (1) - 22223, 10.1038/s41598-021-01618-3
  • Adrian Thorogood, Michael J.S. Beauvais. "International coordination of research ethics review: An adequacy model", Philosophies, 6 - (4) - 10.3390/philosophies6040093
  • Jonathan Lawson, Moran N Cabili, Giselle Kerry, Tiffany Boughtwood, Adrian Thorogood, Pinar Alper, Sarion R Bowers, Rebecca R Boyles, Anthony J Brookes, Matthew Brush, Tony Burdett, Hayley Clissold, Stacey Donnelly, Stephanie O M Dyke, Mallory A Freeberg, Melissa A Haendel, Chihiro Hata, Petr Holub, Francis Jeanson, Aina Jene, Minae Kawashima, Shuichi Kawashima, Melissa Konopko, Irene Kyomugisha, Haoyuan Li, Mikael Linden, Laura Lyman Rodriguez, Mizuki Morita, Nicola Mulder, Jean Muller, Satoshi Nagaie, Jamal Nasir, Soichi Ogishima, Vivian Ota Wang, Laura D Paglione, Ravi N Pandya, Helen Parkinson, Anthony A Philippakis, Fabian Prasser, Jordi Rambla, Kathy Reinold, Gregory A Rushton, Andrea Saltzman, Gary Saunders, Heidi J Sofia, John D Spalding, Morris A Swertz, Ilia Tulchinsky, Esther J van Enckevort, Susheel Varma, Craig Voisin, Natsuko Yamamoto, Chisato Yamasaki, Lyndon Zass, Jaime M Guidry Auvil, Tommi H Nyronen, Melanie Courtot. "The Data Use Ontology to streamline responsible access to human biomedical datasets.", Cell Genomics, 1 - (2) - None, 10.1016/j.xgen.2021.100028
  • Craig Voisin, Mikael Linden, Stephanie O M Dyke, Sarion R Bowers, Pinar Alper, Maxmillian P Barkley, David Bernick, Jianpeng Chao, Melanie Courtot, Francis Jeanson, Melissa A Konopko, Martin Kuba, Jonathan Lawson, Jaakko Leinonen, Stephanie Li, Vivian Ota Wang, Anthony A Philippakis, Kathy Reinold, Gregory A Rushton, J Dylan Spalding, Juha Tornroos, Ilya Tulchinsky, Jaime M Guidry Auvil, Tommi H Nyronen. "GA4GH Passport standard for digital identity and access permissions.", Cell Genomics, 1 - (2) - None, 10.1016/j.xgen.2021.100030
  • Katja Badanjak, Patrycja Mulica, Semra Smajic, Sylvie Delcambre, Leon-Charles Tranchevent, Nico Diederich, Thomas Rauen, Jens C Schwamborn, Enrico Glaab, Sally A Cowley, Paul M A Antony, Sandro L Pereira, Carmen Venegas, Anne Grunewald. "iPSC-Derived Microglia as a Model to Study Inflammation in Idiopathic Parkinson's Disease.", Frontiers In Cell And Developmental Biology, 9 - 740758, 10.3389/fcell.2021.740758
  • Rene Peter Bremm, Christophe Berthold, Rejko Kruger, Klaus Peter Koch, Jorge Goncalves, Frank Hertel. "Therapeutic maps for a sensor-based evaluation of deep brain stimulation programming.", Biomedical Engineering-Biomedizinische Technik, 66 - (6) - 603-611, 10.1515/bmt-2020-0210
  • Marcello Manfredi, Evan Williams, William C Cho, Marco Falasca. "Editorial: Recent Advances in In Vitro and In Vivo Multi-Omics Analyses of Extracellular Vesicles: Therapeutic Targets and Biomarkers.", Frontiers In Molecular Biosciences, 8 - 784436, 10.3389/fmolb.2021.784436
  • Malte Herold, Aymeric Fouquier D’hérouël, Patrick May, Francesco Delogu, Anke Wienecke-Baldacchino, Jessica Tapp, Cécile Walczak, Paul Wilmes, Henry Michel Cauchie, Guillaume Fournier, Leslie Ogorzaly. "Genome sequencing of sars-cov-2 allows monitoring of variants of concern through wastewater", Water, 13 - (21) - 10.3390/w13213018
  • Claire Pauly, Fabiana Ribeiro, Valerie E. Schröder, Laure Pauly, Rejko Krüger, Anja K. Leist, the CON-VINCE Consortium. "The Moderating Role of Resilience in the Personality-Mental Health Relationship During the COVID-19 Pandemic.", Frontiers In Psychiatry, 12 - 745636, 10.3389/fpsyt.2021.745636
  • Martin Ullrich, Annika Mucke, Arne Kuderle, Nils Roth, Till Gladow, Heiko Gabner, Franz Marxreiter, Jochen Klucken, Bjoern M Eskofier, Felix Kluge. "Detection of Unsupervised Standardized Gait Tests From Real-World Inertial Sensor Data in Parkinson's Disease.", Ieee Transactions On Neural Systems And Rehabilitation Engineering, 29 - 2103-2111, 10.1109/TNSRE.2021.3119390
  • Jonas Walter, Silvia Bolognin, Suresh K Poovathingal, Stefano Magni, Deborah Gerard, Paul M A Antony, Sarah L Nickels, Luis Salamanca, Emanuel Berger, Lisa M Smits, Kamil Grzyb, Rita Perfeito, Fredrik Hoel, Xiaobing Qing, Jochen Ohnmacht, Michele Bertacchi, Javier Jarazo, Tomasz Ignac, Anna S Monzel, Laura Gonzalez-Cano, Rejko Kruger, Thomas Sauter, Michele Studer, Luis Pereira de Almeida, Karl J Tronstad, Lasse Sinkkonen, Alexander Skupin, Jens C Schwamborn. "The Parkinson's-disease-associated mutation LRRK2-G2019S alters dopaminergic differentiation dynamics via NR2F1.", Cell Reports, 37 - (3) - 109864, 10.1016/j.celrep.2021.109864
  • Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta-Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristobal Monraz Gomez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Drager, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Bornigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gokce Yagmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, Devasahayam Arokia Balaya Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Groues, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Pena-Chilet, Kinza Rian, Tomas Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurelien Dugourd, Aurelien Naldi, Vincent Noel, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Auge, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Wilighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez-Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, COVID-19 Disease Map Community. "COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.", Molecular Systems Biology, 17 - (10) - e10387, 10.15252/msb.202110387
  • Evan G Williams, Niklas Pfister, Suheeta Roy, Cyril Statzer, Jack Haverty, Jesse Ingels, Casey Bohl, Moaraj Hasan, Jelena Cuklina, Peter Buhlmann, Nicola Zamboni, Lu Lu, Collin Y Ewald, Robert W Williams, Ruedi Aebersold. "Multiomic profiling of the liver across diets and age in a diverse mouse population.", Cell Systems, 10.1016/j.cels.2021.09.005
  • Itxaso Anso, Luis G M Basso, Lei Wang, Alberto Marina, Edgar D Paez-Perez, Christian Jager, Floriane Gavotto, Montse Tersa, Sebastian Perrone, F-Xabier Contreras, Jacques Prandi, Martine Gilleron, Carole L Linster, Francisco Corzana, Todd L Lowary, Beatriz Trastoy, Marcelo E Guerin. "Molecular ruler mechanism and interfacial catalysis of the integral membrane acyltransferase PatA.", Science Advances, 7 - (42) - eabj4565, 10.1126/sciadv.abj4565
  • Pia S Zeiner, Leonhard Mann, Katharina Filipski, Tatjana Starzetz, Marie-Therese Forster, Michael W Ronellenfitsch, Joachim P Steinbach, Michel Mittelbronn, Marlies Wagner, Patrick N Harter. "Immune profile and radiological characteristics of progressive multifocal leukoencephalopathy.", European Journal Of Neurology, 10.1111/ene.15140
  • Gabriela Novak, Steven Finkbeiner, Gaia Skibinski, Alexander Skupin. "Generation of two human induced pluripotent stem cell lines from fibroblasts of unrelated Parkinson's patients carrying the G2019S mutation in the LRRK2 gene (LCSBi005, LCSBi006).", Stem Cell Research, 57 - 102569, 10.1016/j.scr.2021.102569
  • Michelle L.M. Mulder, Xuehui He, Juul M.P.A. van den Reek, Paulo C.M. Urbano, Charlotte Kaffa, Xinhui Wang, Bram van Cranenbroek, Esther van Rijssen, Frank H.J. van den Hoogen, Irma Joosten, Wynand Alkema, Elke M.G.J. de Jong, Ruben L. Smeets, Mark H. Wenink, Hans J.P.M. Koenen. "Blood-based immune profiling combined with machine learning discriminates psoriatic arthritis from psoriasis patients", International Journal Of Molecular Sciences, 22 - (20) - 10.3390/ijms222010990
  • Javier Jarazo, Kyriaki Barmpa, Jennifer Modamio, Claudia Saraiva, Sonia Sabate-Soler, Isabel Rosety, Anne Griesbeck, Florian Skwirblies, Gaia Zaffaroni, Lisa M Smits, Jihui Su, Jonathan Arias-Fuenzalida, Jonas Walter, Gemma Gomez-Giro, Anna S Monzel, Xiaobing Qing, Armelle Vitali, Gerald Cruciani, Ibrahim Boussaad, Francesco Brunelli, Christian Jager, Aleksandar Rakovic, Wen Li, Lin Yuan, Emanuel Berger, Giuseppe Arena, Silvia Bolognin, Ronny Schmidt, Christoph Schroder, Paul M A Antony, Christine Klein, Rejko Kruger, Philip Seibler, Jens C Schwamborn. "Parkinson's Disease Phenotypes in Patient Neuronal Cultures and Brain Organoids Improved by 2-Hydroxypropyl-beta-Cyclodextrin Treatment.", Movement Disorders, 10.1002/mds.28810
  • Peter A. Barbuti, Jochen Ohnmacht, Bruno F. R. Santos, Paul M. Antony, François Massart, Gérald Cruciani, Claire M. Dording, Lukas Pavelka, Nicolas Casadei, Yong-Jun Kwon, Rejko Krüger. "Gene-corrected p.A30P SNCA patient-derived isogenic neurons rescue neuronal branching and function.", Scientific Reports, 11 - (1) - 21946, 10.1038/s41598-021-01505-x
  • Johan Markdahl. "Counterexamples in synchronization: Pathologies of consensus seeking gradient descent flows on surfaces", Automatica, 134 - 10.1016/j.automatica.2021.109945
  • Fotis A Baltoumas, Sofia Zafeiropoulou, Evangelos Karatzas, Savvas Paragkamian, Foteini Thanati, Ioannis Iliopoulos, Aristides G Eliopoulos, Reinhard Schneider, Lars Juhl Jensen, Evangelos Pafilis, Georgios A Pavlopoulos. "OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis.", Nar Genomics And Bioinformatics, 3 - (4) - lqab090, 10.1093/nargab/lqab090
  • Rachel Mendelsohn, Guadalupe C Garcia, Thomas M Bartol, Christopher T Lee, Priya Khandelwal, Emily Liu, Donald J Spencer, Adam Husar, Eric A Bushong, Sebastien Phan, Guy Perkins, Mark H Ellisman, Alexander Skupin, Terrence J Sejnowski, Padmini Rangamani. "Morphological principles of neuronal mitochondria.", Journal Of Comparative Neurology, 10.1002/cne.25254
  • Theresa Luth, Kobi Wasner, Christine Klein, Susen Schaake, Ronnie Tse, Sandro L Pereira, Joshua Lass, Lasse Sinkkonen, Anne Grunewald, Joanne Trinh. "Nanopore Single-Molecule Sequencing for Mitochondrial DNA Methylation Analysis: Investigating Parkin-Associated Parkinsonism as a Proof of Concept.", Frontiers In Aging Neuroscience, 13 - 713084, 10.3389/fnagi.2021.713084
  • Beatriz Garcia Santa Cruz, Matias Nicolas Bossa, Jan Solter, Andreas Dominik Husch. "Public Covid-19 X-ray datasets and their impact on model bias - A systematic review of a significant problem.", Medical Image Analysis, 74 - 102225, 10.1016/j.media.2021.102225
  • Kathleen Mommaerts, Eline A J Willemse, Monica Marchese, Catherine Larue, Wiesje M van der Flier, Fay Betsou, Charlotte E Teunissen. "A Cystatin C Cleavage ELISA Assay as a Quality Control Tool for Determining Sub-Optimal Storage Conditions of Cerebrospinal Fluid Samples in Alzheimer's Disease Research.", Journal Of Alzheimers Disease, 83 - (3) - 1367-1377, 10.3233/JAD-210741
  • Mahmoud Koko, Roland Krause, Thomas Sander, Dheeraj Reddy Bobbili, Michael Nothnagel, Patrick May, Holger Lerche, Epi25 Collaborative. "Distinct gene-set burden patterns underlie common generalized and focal epilepsies.", Ebiomedicine, 72 - 103588, 10.1016/j.ebiom.2021.103588
  • Niklas Pfister, Evan G. Williams, Jonas Peters, Ruedi Aebersold, Peter Bühlmann. "Stabilizing variable selection and regression", Annals Of Applied Statistics, 15 - (3) - 1220-1246, 10.1214/21-AOAS1487
  • Suheeta Roy, Maroun Bou Sleiman, Pooja Jha, Jesse F Ingels, Casey J Chapman, Melinda S McCarty, Jesse D Ziebarth, Michael Hook, Anna Sun, Wenyuan Zhao, Jinsong Huang, Sarah M Neuner, Lynda A Wilmott, Thomas M Shapaker, Arthur G Centeno, David G Ashbrook, Megan K Mulligan, Catherine C Kaczorowski, Liza Makowski, Yan Cui, Robert W Read, Richard A Miller, Khyobeni Mozhui, Evan G Williams, Saunak Sen, Lu Lu, Johan Auwerx, Robert W Williams. "Gene-by-environment modulation of lifespan and weight gain in the murine BXD family.", Nature Metabolism, 3 - (9) - 1217-1227, 10.1038/s42255-021-00449-w
  • Jessy Krier, Randolph R Singh, Todor Kondic, Adelene Lai, Philippe Diderich, Jian Zhang, Paul A Thiessen, Evan E Bolton, Emma L Schymanski. "Discovering pesticides and their TPs in Luxembourg waters using open cheminformatics approaches.", Environment International, 158 - 106885, 10.1016/j.envint.2021.106885
  • Mareike Neumann, Alex Steimle, Erica T Grant, Mathis Wolter, Amy Parrish, Stephanie Willieme, Dirk Brenner, Eric C Martens, Mahesh S Desai. "Deprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen Citrobacter rodentium.", Gut Microbes, 13 - (1) - 1966263, 10.1080/19490976.2021.1966263
  • Stilianos Fodelianakis, Alex D Washburne, Massimo Bourquin, Paraskevi Pramateftaki, Tyler J Kohler, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schon, Susheel Bhanu Busi, Jade Brandani, Paul Wilmes, Hannes Peter, Tom J Battin. "Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome.", Isme Journal, 10.1038/s41396-021-01106-6
  • Charles Auffray, Rudi Balling, Niklas Blomberg, Myrna C. Bonaldo, Bertrand Boutron, Samir Brahmachari, Christian Bréchot, Alfredo Cesario, Sai Juan Chen, Karine Clément, Daria Danilenko, Alberto Di Meglio, Andrea Gelemanović, Carole Goble, Takashi Gojobori, Jason D. Goldman, Michel Goldman, Yi Ke Guo, James Heath, Leroy Hood, Peter Hunter, Li Jin, Hiroaki Kitano, Bartha Knoppers, Doron Lancet, Catherine Larue, Mark Lathrop, Martine Laville, Ariel B. Lindner, Antoine Magnan, Andres Metspalu, Edgar Morin, Lisa F.P. Ng, Laurent Nicod, Denis Noble, Laurent Nottale, Helga Nowotny, Theresa Ochoa, Iruka N. Okeke, Tolu Oni, Peter Openshaw, Mehmet Oztürk, Susanna Palkonen, Janusz T. Paweska, Christophe Pison, Mihael H. Polymeropoulos, Christian Pristipino, Ulrike Protzer, Josep Roca, Damjana Rozman, Marc Santolini, Ferran Sanz, Giovanni Scambia, Eran Segal, Ismail Serageldin, Marcelo Bento Soares, Peter Sterk, Sumio Sugano, Giulio Superti-Furga, David Supple, Jesper Tegner, Mathias Uhlen, Andrea Urbani, Alfonso Valencia, Vincenzo Valentini, Sylvie van der Werf, Manlio Vinciguerra, Olaf Wolkenhauer, Emiel Wouters. "COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight", F1000Research, 9 - 1-18, 10.12688/F1000RESEARCH.26098.1
  • Yujuan Gui, Kamil Grzyb, Mélanie H. Thomas, Jochen Ohnmacht, Pierre Garcia, Manuel Buttini, Alexander Skupin, Thomas Sauter, Lasse Sinkkonen. "Single-nuclei chromatin profiling of ventral midbrain reveals cell identity transcription factors and cell-type-specific gene regulatory variation.", Epigenetics & Chromatin, 14 - (1) - 43, 10.1186/s13072-021-00418-3
  • Melanie H Thomas, Yujuan Gui, Pierre Garcia, Mona Karout, Borja Gomez Ramos, Christian Jaeger, Alessandro Michelucci, Anthoula Gaigneaux, Heike Kollmus, Arthur Centeno, Klaus Schughart, Rudi Balling, Michel Mittelbronn, Joseph H Nadeau, Thomas Sauter, Robert W Williams, Lasse Sinkkonen, Manuel Buttini. "Quantitative trait locus mapping identifies a locus linked to striatal dopamine and points to collagen IV alpha-6 chain (COL4A6) as a novel regulator of striatal axonal branching in mice.", Genes, Brain, And Behavior, 20 - (8) - e12769, 10.1111/gbb.12769
  • Valentina Galata, Susheel Bhanu Busi, Benoit Josef Kunath, Laura de Nies, Magdalena Calusinska, Rashi Halder, Patrick May, Paul Wilmes, Cedric Christian Laczny. "Functional meta-omics provide critical insights into long- and short-read assemblies.", Briefings In Bioinformatics, 22 - (6) - 10.1093/bib/bbab330
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Letter

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