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Dr. Christophe Trefois

Team Leader of R3 and IT infrastructure

Faculté ou Centre Luxembourg Centre for Systems Biomedicine
Department Bioinformatics Core
Adresse postale Université du Luxembourg
2, Avenue de l'Université
L-4365 Esch-sur-Alzette
E-mail
Téléphone (+352) 46 66 44 6124
Video Christophe Trefois (LCSB)
Christophe Trefois (LCSB)
 
Christophe Trefois (LCSB)

Postdoc in the Bioinformatics Core group (R. Schneider Lab)

Last updated on: mercredi 02 septembre 2015

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2021

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See detailPredictProtein - Predicting Protein Structure and Function for 29 Years
Bernhofer, Michael; Dallago, Christian; Karl, Tim; Satagopam, Venkata; Heinzinger, Michael; Littmann, Maria; Olenyi, Tobias; Qiu, Jiajun; Schütze, Konstantin; Yachdav, Guy; Ashkenazy, Haim; Ben-Tal, Nir; Bromberg, Yana; Goldberg, Tatyana; Kajan, Laszlo; O’Donoghue, Sean; Sander, Chris; Schafferhans, Andrea; Schlessinger, Avner; Vriend, Gerrit; Mirdita, Milot; Gawron, Piotr; Gu, Wei; Jarosz, Yohan; Trefois, Christophe; Steinegger, Martin; Schneider, Reinhard; Rost, Burkhard

in Nucleic Acids Research (2021)

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See detailCOBREXA.jl: constraint-based reconstruction and exascale analysis
Kratochvil, Miroslav; Heirendt, Laurent; Wilken, St Elmo; Pusa, Taneli; Arreckx, Sylvain; Noronha, Alberto; van Aalst, Marvin; Satagopam, Venkata; Ebenhöh, Oliver; Schneider, Reinhard; Trefois, Christophe; Gu, Wei

in Bioinformatics (2021)

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2020

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See detailThe need for standardisation in life science research - an approach to excellence and trust.
Hollmann, Susanne; Kremer, Andreas; Baebler, Špela; Trefois, Christophe; Gruden, Kristina; Rudnicki, Witold R.; Tong, Weida; Gruca, Aleksandra; Bongcam-Rudloff, Erik; Evolo, Chris T.; Nechyporenko, Alina; Frohme, Marcus; Šafránek, David; Regierer, Babette; D'Elia, Domenica

in F1000Research (2020), 9(1398),

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See detailGigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets
Kratochvil, Miroslav; Hunewald, Oliver; Heirendt, Laurent; Verissimo, Vasco; Vondrášek, Jiří; Satagopam, Venkata; Schneider, Reinhard; Trefois, Christophe; Ollert, Markus

in GigaScience (2020), 9(11),

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2019

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See detailDAISY: A Data Information System for accountability under the General Data Protection Regulation
Becker, Regina; Alper, Pinar; Groues, Valentin; Munoz, Sandrine; Jarosz, Yohan; Lebioda, Jacek; Rege, Kavita; Trefois, Christophe; Satagopam, Venkata; Schneider, Reinhard

in GigaScience (2019), 8(12),

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2018

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See detailFractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data
Herzinger, Sascha; Groues, Valentin; Gu, Wei; Satagopam, Venkata; Banda, Peter; Trefois, Christophe; Schneider, Reinhard

in GigaScience (2018)

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2016

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See detailCharacterization of Differentiated SH-SY5Y as Neuronal Screening Model Reveals Increased Oxidative Vulnerability
Antony, Paul; Forster, Julia; Köglsberger, Sandra; Trefois, Christophe; Boyd, Olga; Baumuratov, Aidos; Balling, Rudi; Buck, L

in Journal of Biomolecular Screening (2016)

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2015

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See detailPlatelet mitochondrial membrane potential in Parkinson's disease.
Antony, Paul; Boyd, Olga; Trefois, Christophe; Ammerlaan, Wim; Ostaszewski, Marek; Baumuratov, Aidos S.; Longhino, Laura; Antunes, Laurent; Koopman, Werner; Balling, Rudi; Diederich, Nico J.

in Annals of clinical and translational neurology (2015), 2(1), 67-73

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See detailEvaluation of Cell Line Suitability for Disease Specific Perturbation Experiments.
Biryukov, Maria; Antony, Paul; Krishna, Abhimanyu; May, Patrick; Trefois, Christophe

in Lausen, Berthold; Krolak-Schwerdt, Sabine; Böhmer, Matthias (Eds.) Data Science, Learning by Latent Structures, and Knowledge Discovery (2015, February 20)

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See detailCritical transitions in chronic disease: transferring concepts from ecology to systems medicine
Trefois, Christophe; Antony, Paul; Goncalves, Jorge; Skupin, Alexander; Balling, Rudi

in Current Opinion in Biotechnology (2015), 34

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2014

See detailAnalysis of mitochondrial membrane potential in idiopathic Parkinson's disease: A case-control study
Antony, Paul; Boyd, Olga; Trefois, Christophe; Ostaszewski, Marek; Baumuratov, Aidos; Balling, Rudi; Diederich, Nico

Scientific Conference (2014, June 12)

See detailCuration of complex molecular pathways of Parkinson's disease as a collaborative scientific community effort
Antony, Paul; Ostaszewski, Marek; Gawron, P; Trefois, Christophe; Fujita, K.A.; Mosch, Sabine; Balling, Rudi

Scientific Conference (2014, June 12)

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See detailIntegrating Pathways of Parkinson's Disease in a Molecular Interaction Map
Fujita, Kazuhiro A.; Ostaszewski, Marek; Matsuoka, Yukiko; Ghosh, Samik; Glaab, Enrico; Trefois, Christophe; Crespo, Isaac; Perumal, Thanneer Malai; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kodama, Akihiko; Satagopam, Venkata; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

in Molecular Neurobiology (2014)

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See detailSystems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease
Krishna, Abhimanyu; Biryukov, Maria; Trefois, Christophe; Antony, Paul; Hussong, Rene; Lin, Jake; Heinäniemi, Merja; Glusman, Gustavo; Köglsberger, Sandra; Boyd, Olga; van den Berg, Bart H.J.; Linke, Dennis; Huang, David; Wang, Kai; Hood, Leroy; Tholey, Andreas; Schneider, Reinhard; Galas, David J.; Balling, Rudi; May, Patrick

in BMC Genomics (2014), 15(1154),

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See detailAutomated nuclei clump splitting by combining local concavity orientation and graph partitioning
Samsi, Siddharth; Trefois, Christophe; Antony, Paul; Skupin, Alexander

in International Conference on Biomedical and Health Informatics (2014)

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See detailReproducible Research Results R3
Trefois, Christophe; Jarosz, Yohan; Gu, Wei; Satagopam, Venkata; Coronado, Sergio; Schneider, Reinhard

Poster (2014, December)

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2013

See detailDifferentiated SH-SY5Y Cells as PD Model for Mitochondrial Dysfunction: From Whole Genome Sequencing to an Educated Design of High-Throughput Experiments
Antony, Paul; Krishna, Abhimanyu; May, Patrick; Trefois, Christophe; Boyd, Olga; Köglsberger, Sandra; Baumuratov, Aidos; Galas, David J.; Balling, Rudi

Poster (2013)

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See detailLight microscopy applications in systems biology: opportunities and challenges.
Antony, Paul; Trefois, Christophe; Stojanovic, Aleksandar; Baumuratov, Aidos; Kozak, Karol

in Cell Communication and Signaling (2013), 11(1), 1-19

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See detailThe Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways
Ostaszewski, Marek; Fujita, Kazuhiro; Matsuoka, Yukiko; Ghosh, Samik; Glaab, Enrico; Trefois, Christophe; Crespo, Isaac; Perumal, Thanneer Malai; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kolodkin, Alexey; Kodama, Akihiko; Satagopam, Venkata; Biryukov, Maria; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

Poster (2013, March 09)

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2012

See detailConstructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology
Trefois, Christophe; Fujita, A. K.; Ostaszewski, Marek; Matsuoka, Yukiko; Ghosh, Samic; Glaab, Enrico; Crespo, Isaac; Perumal, T. M.; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kodama, Akihiko; Satagopam, Venkata; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

Poster (2012, August)

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2011

See detailAnalysis of critical transitions in Parkinson's disease
Trefois, Christophe; Antony, Paul; Baumuratov, Aidos; Boyd, Olga; Köglsberger, Sandra; Balling, Rudi

Poster (2011, December 12)

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2009

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See detailEfficient Access Control for Wireless Sensor Data
Sorniotti, Alessandro; Molva, Refik; Gomez, Laurent; Trefois, Christophe; Laube, Annett; Scaglioso, Piervito

in International Journal of Wireless Information Networks (2009), 6(3), 165--174

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