Venkata Satagopam
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| Faculté ou Centre | Luxembourg Centre for Systems Biomedicine | ||||
| Department | Bioinformatics Core | ||||
| Adresse postale |
Université du Luxembourg 6, avenue du Swing L-4367 Belvaux |
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| Bureau sur le campus | BTL, E04 190 | ||||
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| Téléphone | (+352) 46 66 44 6421 | ||||
Scientific staff in the Bioinformatics Core group (Schneider Lab)
Last updated on: mercredi 09 juillet 2014
2023
Altered infective competence of the human gut microbiome in COVID-19; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Microbiome (2023), 11(1), 46
2022
Selection of data sets for FAIRification in drug discovery and development: Which, why, and how?; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Drug Discovery Today (2022)
Editorial: Digital Innovation and Data-Driven Research in Neurodegenerative Diseases; ; ;
in Frontiers in Neurology (2022), 13
Individual factors and beliefs determining COVID-19 vaccination willingness; ; ; ; ; ; ; ; ;
Poster (2022, April)
SMASCH: Facilitating multi-appointment scheduling in longitudinal clinical research studies and care programs; ; ; ; ; ;
Poster (2022, September 20)
Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies.; ; ; ; ; ; ; ; ;
in JAMIA open (2022), 5(2), 038
Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings; ; ;
in Bioinformatics and Biomedical Engineering (2022)
2021
Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Cardiovascular Research (2021)
PredictProtein - Predicting Protein Structure and Function for 29 Years; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Nucleic Acids Research (2021)
The BIOMarkers in Atopic Dermatitis and Psoriasis (BIOMAP) Glossary: developing a lingua franca to facilitate data harmonisation and cross-cohort analyses; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in British Journal of Dermatology (2021)
COBREXA.jl: constraint-based reconstruction and exascale analysis; ; ; ; ; ; ; ; ; ; ;
in Bioinformatics (2021)
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Molecular systems biology (2021), 17(10), 10387
2020
GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets; ; ; ; ; ; ; ;
in GigaScience (2020), 9(11),
Genetic Architecture of Parkinson's Disease in the Indian Population: Harnessing Genetic Diversity to Address Critical Gaps in Parkinson's Disease Research.; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Frontiers in neurology (2020), 11
Prevalence of SARS-CoV-2 infection in the Luxembourgish population: the CON-VINCE study.; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
E-print/Working paper (2020)
BioKC: a platform for quality controlled curation and annotation of systems biology models; ; ; ;
Scientific Conference (2020, September 04)
BioKC: a collaborative platform for systems biology model curation and annotation; ; ; ;
in bioRxiv (2020)
Supporting findability of COVID-19 research with large-scale text mining of scientific publications; ; ; ; ; ;
Poster (2020, November 27)
2019
DAISY: A Data Information System for accountability under the General Data Protection Regulation; ; ; ; ; ; ; ; ;
in GigaScience (2019), 8(12),
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium; ; ; ; ; ; ; ; ; ; ; ; ;
in BMC Bioinformatics (2019), 20(1), 164
2018
Presenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART; ; ; ; ; ; ; ; ; ; ; ; ;
in Bioinformatics (2018)
Fractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data; ; ; ; ; ;
in GigaScience (2018)
The Luxembourg Parkinson’s Study: A Comprehensive Approach for Stratification and Early Diagnosis; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Frontiers in Aging Neuroscience (2018), 10
2017
Confronting the catalytic dark matter encoded by sequenced genomes; ; ; ;
in Nucleic Acids Research (2017), 45(20), 11495-11514
SmartR: An open-source platform for interactive visual analytics for translational research data.; ; ; ; ; ;
in Bioinformatics (2017)
2016
MINERVA—a platform for visualization and curation of molecular interaction networks; ; ; ; ; ; ; ; ; ;
in NPJ Systems Biology and Applications (2016)
Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases.; ; ; ; ; ; ; ;
in Big data (2016), 4(2), 97-108
2015
Constitutive activation of oncogenic PDGFRalpha-mutant proteins occurring in GIST patients induces receptor mislocalisation and alters PDGFRalpha signalling characteristics.; ; ; ; ; ; ; ; ; ; ;
in Cell Communication and Signaling (2015), 13
The oncogenic FIP1L1-PDGFRalpha fusion protein displays skewed signaling properties compared to its wild-type PDGFRalpha counterpart.; ; ; ; ; ; ; ; ; ; ;
in JAK-STAT (2015), 4(1), 1062596
siRNA screen identifies QPCT as a druggable target for Huntington's disease.; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Nature chemical biology (2015), 11(5), 347354
A draft network of ligand–receptor-mediated multicellular signalling in human; ; ; ; ; ; ; ; ; ;
in Nature Communications (2015), 6
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Biofilms and Microbiomes (2015), 1(15007),
2014
The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data; ; ; ; ; ;
in PLoS Computational Biology (2014)
Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Molecular Neurobiology (2014)
2013
Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain.; ; ; ; ;
in EMBO Molecular Medicine (2013), 5(11), 1740-58
Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors.; ; ; ; ;
in Molecular Pain (2013), 9(1), 48
Signaling in Insulin-Secreting MIN6 Pseudoislets and Monolayer Cells.; ; ; ; ; ; ;
in Journal of proteome research (2013)
The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.; ; ; ; ; ;
in PLoS computational biology (2013), 9(11), 1003350
The Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
Poster (2013, March 09)
OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction.; ; ; ; ; ; ; ;
Poster (2013)
Integrated omics highlights keystone genes in community-wide metabolic networks; ; ; ; ;
Poster (2013)
Integrated omics highlights keystone genes in community-wide metabolic networks; ; ; ; ;
Poster (2013)
Nuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain; ; ; ; ; ; ; ; ; ;
in Neuron (2013), 77(1), 43-57
2012
Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
Poster (2012, August)
2010
Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition; ; ; ; ; ; ; ;
in PLoS ONE (2010), 5(6),
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ;
in Nature (2010), 464(7289), 721-727
Reflect: A practical approach to web semantics; ; ; ; ; ; ;
in Journal of Web Semantics (2010), 8(2-3), 182-189
GPCRs, G-proteins, Effectors and their interactions: Human-gpDB, a database employing advanced visualization tools and data integration techniques; ; ; ; ; ; ;
in Database: the Journal of Biological Databases and Curation (2010)
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques.; ; ; ; ; ; ;
in Database: the Journal of Biological Databases and Curation (2010), 2010
Martini: using literature keywords to compare gene sets.; ; ; ; ; ;
in Nucleic acids research (2010), 38(1), 26-38
2008
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence.; ; ;
in BMC bioinformatics (2008), 9
